Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PUW68_RS07690 Genome accession   NZ_CP118060
Coordinates   1559488..1560354 (-) Length   288 a.a.
NCBI ID   WP_070844090.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain VSI35     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1554488..1565354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW68_RS07675 (PUW68_07675) xerC 1554844..1555737 (-) 894 WP_070442302.1 tyrosine recombinase XerC -
  PUW68_RS07680 (PUW68_07680) trmFO 1555909..1557216 (-) 1308 WP_037537326.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PUW68_RS07685 (PUW68_07685) topA 1557240..1559309 (-) 2070 WP_070442300.1 type I DNA topoisomerase -
  PUW68_RS07690 (PUW68_07690) dprA 1559488..1560354 (-) 867 WP_070844090.1 DNA-processing protein DprA Machinery gene
  PUW68_RS07695 (PUW68_07695) - 1560573..1561803 (-) 1231 Protein_1483 aminoacyltransferase -
  PUW68_RS07700 (PUW68_07700) - 1561834..1562086 (-) 253 Protein_1484 CHAP domain-containing protein -
  PUW68_RS07705 (PUW68_07705) sucD 1562433..1563338 (-) 906 WP_037551652.1 succinate--CoA ligase subunit alpha -
  PUW68_RS07710 (PUW68_07710) sucC 1563360..1564526 (-) 1167 WP_053017080.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33187.17 Da        Isoelectric Point: 9.0618

>NTDB_id=789726 PUW68_RS07690 WP_070844090.1 1559488..1560354(-) (dprA) [Staphylococcus haemolyticus strain VSI35]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPDFFKFSYTDQIDTIRNWDRMFHNDDFIDKFNNLNEKDILSFLQNHKVSFTT
PFNTNYPRQLKEIYDYPFVLFYQGDPLLLTFSNTLGVVGSRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEEKGLVISEYPPLTSVRRYHFPQRNRLISGLSKGVLITEASVRSGSQIT
IDCALEQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=789726 PUW68_RS07690 WP_070844090.1 1559488..1560354(-) (dprA) [Staphylococcus haemolyticus strain VSI35]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGCTAGGTTATACGACCCAACATATTCATCATTTATTAAAATT
AAATCCTGATTTTTTTAAATTCTCTTATACTGATCAAATAGATACAATAAGAAATTGGGACAGAATGTTTCATAATGACG
ATTTTATTGATAAATTTAATAATTTAAATGAAAAAGATATTTTGTCATTTTTGCAGAATCACAAAGTAAGTTTTACAACA
CCGTTTAATACTAATTATCCTCGACAGTTAAAAGAAATTTATGATTATCCGTTTGTCCTATTTTACCAAGGTGACCCCCT
TTTATTAACATTCTCCAATACATTAGGTGTGGTGGGCTCAAGAAATGCAACAGAATACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACTATTATTTCTGGTTTGGCAAAAGGTGCTGATAGCATAGCACATCATTTT
GCTATAGAGTATCAATTACCTACAATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGAAAAAGGTTTAGTTATTAGTGAATATCCGCCACTTACTAGTGTTAGGCGATATCACTTTCCGC
AACGCAATCGTTTGATAAGCGGTCTTTCAAAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGTGCATTAGAGCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACAAAAGGTAATTT
GAAACGAGCTCAAGAAGGTGCGATGATTGTAACCTCTGCTGATGATATCCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

52.281

98.958

0.517
  dprA Staphylococcus aureus N315

52.281

98.958

0.517