Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   Q7648_RS10005 Genome accession   NZ_CP131632
Coordinates   1906254..1906649 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2018S05-288     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1901254..1911649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7648_RS10000 (Q7648_10100) - 1906033..1906152 (+) 120 Protein_1938 competence protein ComE -
  Q7648_RS10005 (Q7648_10105) comE 1906254..1906649 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  Q7648_RS10010 (Q7648_10110) - 1907054..1907503 (-) 450 WP_341944681.1 transposase -
  Q7648_RS10015 (Q7648_10115) dnaJ 1907637..1908758 (+) 1122 WP_048339528.1 molecular chaperone DnaJ -
  Q7648_RS10020 (Q7648_10120) - 1908953..1910971 (+) 2019 WP_003690172.1 oligopeptide transporter, OPT family -
  Q7648_RS10025 (Q7648_10125) rfbC 1911015..1911572 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=789717 Q7648_RS10005 WP_003703428.1 1906254..1906649(+) (comE) [Neisseria gonorrhoeae strain 2018S05-288]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=789717 Q7648_RS10005 WP_003703428.1 1906254..1906649(+) (comE) [Neisseria gonorrhoeae strain 2018S05-288]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1