Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PUW68_RS04105 Genome accession   NZ_CP118060
Coordinates   827263..827661 (+) Length   132 a.a.
NCBI ID   WP_070580750.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain VSI35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 822263..832661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW68_RS04075 (PUW68_04075) atpD 822539..823951 (+) 1413 WP_070580752.1 F0F1 ATP synthase subunit beta -
  PUW68_RS04080 (PUW68_04080) - 823972..824373 (+) 402 WP_011275244.1 F0F1 ATP synthase subunit epsilon -
  PUW68_RS04085 (PUW68_04085) - 824501..824734 (+) 234 WP_053026877.1 DUF1146 family protein -
  PUW68_RS04090 (PUW68_04090) murA 824839..826104 (+) 1266 WP_016931214.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PUW68_RS04095 (PUW68_04095) fabZ 826144..826581 (+) 438 WP_016931213.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PUW68_RS04100 (PUW68_04100) - 826631..827074 (-) 444 WP_011275248.1 YwpF-like family protein -
  PUW68_RS04105 (PUW68_04105) ssb 827263..827661 (+) 399 WP_070580750.1 single-stranded DNA-binding protein Machinery gene
  PUW68_RS04110 (PUW68_04110) - 827999..828706 (+) 708 WP_070580749.1 transglycosylase family protein -
  PUW68_RS04115 (PUW68_04115) tenA 828989..829678 (+) 690 WP_070580748.1 thiaminase II -
  PUW68_RS04120 (PUW68_04120) thiD 829671..830492 (+) 822 WP_070580746.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PUW68_RS04125 (PUW68_04125) thiM 830485..831276 (+) 792 WP_070580744.1 hydroxyethylthiazole kinase -
  PUW68_RS04130 (PUW68_04130) thiE 831278..831916 (+) 639 WP_070580742.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15191.06 Da        Isoelectric Point: 4.7942

>NTDB_id=789709 PUW68_RS04105 WP_070580750.1 827263..827661(+) (ssb) [Staphylococcus haemolyticus strain VSI35]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDEYNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNNLPNTSYDEDAYSFDHLEVIDVN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=789709 PUW68_RS04105 WP_070580750.1 827263..827661(+) (ssb) [Staphylococcus haemolyticus strain VSI35]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAGATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAATATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGTCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
CGATAATAATCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCATCTTGAAGTGATTGATGTTAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

99.242

0.735
  ssb Staphylococcus aureus MW2

73.282

99.242

0.727