Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   PUW71_RS10070 Genome accession   NZ_CP118053
Coordinates   1955843..1956610 (+) Length   255 a.a.
NCBI ID   WP_070672281.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1951970..1958083 1955843..1956610 within 0


Gene organization within MGE regions


Location: 1951970..1958083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS10045 (PUW71_10045) - 1951970..1953145 (-) 1176 WP_070811584.1 IS256-like element ISSag11 family transposase -
  PUW71_RS10050 (PUW71_10050) - 1953497..1953643 (-) 147 WP_003029519.1 bacteriocin -
  PUW71_RS10060 (PUW71_10060) rlmH 1953925..1954404 (-) 480 WP_024052476.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  PUW71_RS10065 (PUW71_10065) htrA 1954598..1955788 (+) 1191 WP_024052475.1 trypsin-like peptidase domain-containing protein Regulator
  PUW71_RS10070 (PUW71_10070) spo0J 1955843..1956610 (+) 768 WP_070672281.1 ParB/RepB/Spo0J family partition protein Regulator
  PUW71_RS10075 (PUW71_10075) - 1956908..1958083 (+) 1176 WP_070811584.1 IS256-like element ISSag11 family transposase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29588.08 Da        Isoelectric Point: 9.3660

>NTDB_id=789633 PUW71_RS10070 WP_070672281.1 1955843..1956610(+) (spo0J) [Streptococcus anginosus strain VSI40]
MEKYQYITLNDIQTNPYQPRKEFSEEKIAELASSIKEHGIIQPIIVRKSPIIGYELLAGERRFRAAKLAGLTNIPAIIKE
VTDDEMMKQAIIENLQREDLNPIEEAQSYQYLIDKGLTHKEIALTMGKSRPYITNSVRLLNLPLNIIEAIKEGNISQGHA
RLLINLSEKEQNQWFDKILSQSLSVRQLEKQLHSQQTKTVTKNKHHLFLKEEEKRLKKIFGTEISLQFSKQSQSGKICIH
FSNLEEYQRIIDSFK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=789633 PUW71_RS10070 WP_070672281.1 1955843..1956610(+) (spo0J) [Streptococcus anginosus strain VSI40]
ATGGAAAAATATCAATATATCACACTTAATGACATCCAAACAAATCCTTATCAACCAAGAAAAGAATTTTCAGAAGAAAA
AATTGCTGAACTTGCTAGTTCTATAAAAGAACATGGGATTATTCAGCCCATCATTGTACGAAAATCTCCGATAATTGGTT
ATGAATTGCTAGCTGGTGAAAGGCGTTTTAGAGCTGCTAAATTAGCAGGCTTAACAAATATACCAGCTATTATAAAAGAA
GTAACAGATGATGAAATGATGAAGCAAGCCATCATTGAAAATTTACAACGAGAAGATTTAAATCCTATAGAAGAAGCACA
ATCTTATCAATATTTGATTGACAAAGGGTTGACACATAAAGAAATCGCTCTAACTATGGGAAAATCACGTCCTTATATTA
CAAATTCCGTCCGGTTATTAAATTTACCTCTCAATATTATCGAAGCGATAAAAGAAGGAAATATTTCTCAGGGACACGCT
CGTCTGCTCATTAATCTCTCAGAAAAAGAGCAAAATCAGTGGTTTGATAAAATCTTATCTCAAAGCCTTTCAGTTCGACA
GCTAGAAAAACAATTACATTCCCAACAGACAAAAACTGTAACAAAAAATAAACATCATCTCTTCCTCAAAGAGGAAGAAA
AAAGATTAAAAAAGATATTTGGTACAGAGATTTCTCTTCAATTTTCTAAACAATCTCAATCAGGGAAAATTTGTATTCAT
TTTTCAAACCTAGAAGAATATCAAAGAATTATTGACAGCTTTAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(146-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.51

100

0.545