Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   PUW71_RS07830 Genome accession   NZ_CP118053
Coordinates   1531259..1531948 (-) Length   229 a.a.
NCBI ID   WP_101800963.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1526259..1536948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS07810 (PUW71_07810) nrdR 1526744..1527217 (-) 474 WP_024052506.1 transcriptional regulator NrdR -
  PUW71_RS07815 (PUW71_07815) - 1527383..1527979 (+) 597 Protein_1507 hypothetical protein -
  PUW71_RS07820 (PUW71_07820) - 1528027..1528842 (-) 816 WP_024052509.1 endonuclease/exonuclease/phosphatase family protein -
  PUW71_RS07825 (PUW71_07825) - 1528859..1531048 (-) 2190 WP_042754091.1 PTS transporter subunit IIBC -
  PUW71_RS07830 (PUW71_07830) covR 1531259..1531948 (-) 690 WP_101800963.1 response regulator transcription factor Regulator
  PUW71_RS07835 (PUW71_07835) gndA 1531957..1533381 (-) 1425 WP_024052512.1 NADP-dependent phosphogluconate dehydrogenase -
  PUW71_RS07840 (PUW71_07840) - 1533679..1534302 (-) 624 WP_150867150.1 DNA alkylation repair protein -
  PUW71_RS07845 (PUW71_07845) - 1534353..1534889 (-) 537 WP_070812069.1 DUF177 domain-containing protein -
  PUW71_RS07850 (PUW71_07850) - 1535002..1535859 (+) 858 Protein_1514 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26448.51 Da        Isoelectric Point: 6.2732

>NTDB_id=789615 PUW71_RS07830 WP_101800963.1 1531259..1531948(-) (covR) [Streptococcus anginosus strain VSI40]
MGKRILLVEKEKKLAQFIGLELQKEGYRVDLFETGKDALASARANQYDLFLLNFMLDDMTGTEFAAQLSVIKPASVIIVL
DNRDNILQYTEEIQRFAVAYMVEPFIVTDLVEKISAIFRGRDFIDQHCSQMKVPTSYRNLRIDVQNHTVYRGEEVIALTR
REYDLLATLMGSHQALSREQLLERVWKYEGAVETNVVDVYIRYLRSKMDIAGQKSYIKTVRGVGYAMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=789615 PUW71_RS07830 WP_101800963.1 1531259..1531948(-) (covR) [Streptococcus anginosus strain VSI40]
ATGGGGAAGCGGATTTTATTAGTTGAGAAAGAAAAAAAATTAGCGCAATTTATTGGCTTAGAGCTACAAAAAGAAGGTTA
TCGAGTTGATCTTTTTGAAACAGGAAAAGATGCTTTGGCGTCTGCGAGAGCTAATCAATACGATTTATTCCTGTTGAATT
TTATGCTTGACGATATGACAGGAACAGAATTTGCCGCACAATTAAGTGTGATAAAGCCTGCTTCGGTCATCATTGTATTG
GATAATCGTGATAATATTCTTCAATATACTGAGGAAATCCAACGCTTTGCTGTTGCTTACATGGTAGAACCATTCATTGT
GACGGACTTAGTTGAAAAAATTTCTGCCATTTTTCGTGGGCGTGATTTTATTGACCAGCATTGTAGTCAGATGAAAGTTC
CAACATCTTATCGGAATCTTCGGATTGATGTGCAAAATCATACAGTTTATCGAGGTGAAGAAGTGATTGCTTTGACTCGA
AGAGAGTATGATTTATTAGCAACATTGATGGGAAGTCATCAGGCTTTAAGCCGTGAACAGTTGTTAGAACGCGTGTGGAA
ATACGAAGGAGCTGTTGAAACAAATGTTGTCGATGTTTATATTCGCTATCTTCGTAGTAAAATGGATATAGCGGGGCAAA
AAAGTTATATAAAAACCGTGCGTGGTGTTGGTTATGCTATGCAAGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

47.826

100

0.48
  covR Lactococcus lactis subsp. lactis strain DGCC12653

45.175

99.563

0.45