Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7650_RS09590 Genome accession   NZ_CP131626
Coordinates   1822393..1822815 (+) Length   140 a.a.
NCBI ID   WP_341944674.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020S05-258     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1817393..1827815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7650_RS09550 (Q7650_09625) - 1818322..1818630 (-) 309 Protein_1859 NAD(P)-dependent oxidoreductase -
  Q7650_RS09555 (Q7650_09630) - 1818634..1818975 (+) 342 Protein_1860 pilin -
  Q7650_RS09560 (Q7650_09635) - 1819015..1819358 (+) 344 Protein_1861 pilin -
  Q7650_RS09565 (Q7650_09640) - 1819376..1819699 (+) 324 Protein_1862 pilin -
  Q7650_RS09570 (Q7650_09645) - 1820201..1820599 (+) 399 Protein_1863 pilin -
  Q7650_RS09575 (Q7650_09650) - 1820626..1820984 (+) 359 Protein_1864 pilin -
  Q7650_RS09580 (Q7650_09655) - 1821011..1821442 (+) 432 Protein_1865 pilin -
  Q7650_RS09585 (Q7650_09660) - 1821536..1821886 (+) 351 Protein_1866 pilin -
  Q7650_RS09590 (Q7650_09665) pilE 1822393..1822815 (+) 423 WP_341944674.1 pilin Machinery gene
  Q7650_RS09595 (Q7650_09670) thiC 1823303..1825204 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  Q7650_RS09605 (Q7650_09680) - 1825802..1826677 (+) 876 WP_003686971.1 NUDIX domain-containing protein -
  Q7650_RS09610 (Q7650_09685) - 1826686..1827627 (+) 942 WP_003686969.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15186.79 Da        Isoelectric Point: 5.0091

>NTDB_id=789569 Q7650_RS09590 WP_341944674.1 1822393..1822815(+) (pilE) [Neisseria gonorrhoeae strain 2020S05-258]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGEWPEDNDKAGVASASDIKGKYVKSVTVTNGVVTAQMNPSGVNKEIK
GKKLSLWAKRENGSVKWFCGQPVKRTDADDANDTVADANDADKIETKHLPSTCRDESTAK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=789569 Q7650_RS09590 WP_341944674.1 1822393..1822815(+) (pilE) [Neisseria gonorrhoeae strain 2020S05-258]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCGAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCGCCTCCGACATCAAAGGCA
AATATGTTAAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCCAAATGAATCCAAGCGGCGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCACCGA
CGCCGACGACGCCAACGACACCGTTGCCGACGCCAACGACGCCGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCC
GCGATGAATCAACTGCCAAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

71.429

100

0.714
  pilE Neisseria gonorrhoeae MS11

69.286

100

0.693