Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7651_RS09320 Genome accession   NZ_CP131622
Coordinates   1767535..1767957 (+) Length   140 a.a.
NCBI ID   WP_341944674.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020N07-265     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1762535..1772957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7651_RS09280 (Q7651_09380) - 1763265..1763573 (-) 309 Protein_1805 NAD(P)-dependent oxidoreductase -
  Q7651_RS09285 (Q7651_09385) pilE 1763625..1764050 (+) 426 WP_341948080.1 pilin Machinery gene
  Q7651_RS09290 (Q7651_09390) - 1764103..1764459 (+) 357 Protein_1807 pilin -
  Q7651_RS09295 (Q7651_09395) - 1764957..1765340 (+) 384 Protein_1808 pilin -
  Q7651_RS09300 (Q7651_09400) - 1765401..1765721 (+) 321 Protein_1809 pilin -
  Q7651_RS09305 (Q7651_09405) - 1765767..1766126 (+) 360 Protein_1810 pilin -
  Q7651_RS09310 (Q7651_09410) - 1766153..1766584 (+) 432 Protein_1811 pilin -
  Q7651_RS09315 (Q7651_09415) - 1766678..1767028 (+) 351 Protein_1812 pilin -
  Q7651_RS09320 (Q7651_09420) pilE 1767535..1767957 (+) 423 WP_341944674.1 pilin Machinery gene
  Q7651_RS09325 (Q7651_09425) thiC 1768445..1770346 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -
  Q7651_RS09335 (Q7651_09435) - 1770944..1771819 (+) 876 WP_003686971.1 NUDIX domain-containing protein -
  Q7651_RS09340 (Q7651_09440) - 1771828..1772769 (+) 942 WP_003686969.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15186.79 Da        Isoelectric Point: 5.0091

>NTDB_id=789499 Q7651_RS09320 WP_341944674.1 1767535..1767957(+) (pilE) [Neisseria gonorrhoeae strain 2020N07-265]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGEWPEDNDKAGVASASDIKGKYVKSVTVTNGVVTAQMNPSGVNKEIK
GKKLSLWAKRENGSVKWFCGQPVKRTDADDANDTVADANDADKIETKHLPSTCRDESTAK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=789499 Q7651_RS09320 WP_341944674.1 1767535..1767957(+) (pilE) [Neisseria gonorrhoeae strain 2020N07-265]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCGAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCGCCTCCGACATCAAAGGCA
AATATGTTAAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCCAAATGAATCCAAGCGGCGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCACCGA
CGCCGACGACGCCAACGACACCGTTGCCGACGCCAACGACGCCGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCC
GCGATGAATCAACTGCCAAATAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(14-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

71.429

100

0.714
  pilE Neisseria gonorrhoeae MS11

69.286

100

0.693