Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   PUW62_RS08595 Genome accession   NZ_CP118046
Coordinates   1702156..1703082 (-) Length   308 a.a.
NCBI ID   WP_024052699.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI52     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1697156..1708082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW62_RS08570 (PUW62_08570) - 1698142..1699107 (+) 966 WP_003031743.1 LacI family DNA-binding transcriptional regulator -
  PUW62_RS10760 - 1699181..1700003 (-) 823 Protein_1647 Cof-type HAD-IIB family hydrolase -
  PUW62_RS08585 (PUW62_08585) amiF 1700146..1701069 (-) 924 WP_024052698.1 ATP-binding cassette domain-containing protein Regulator
  PUW62_RS08590 (PUW62_08590) amiE 1701080..1702147 (-) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  PUW62_RS08595 (PUW62_08595) amiD 1702156..1703082 (-) 927 WP_024052699.1 oligopeptide ABC transporter permease OppC Regulator
  PUW62_RS08600 (PUW62_08600) amiC 1703082..1704578 (-) 1497 WP_024052700.1 ABC transporter permease Regulator
  PUW62_RS08605 (PUW62_08605) amiA3 1704954..1706933 (-) 1980 WP_024052701.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34502.56 Da        Isoelectric Point: 9.7392

>NTDB_id=789490 PUW62_RS08595 WP_024052699.1 1702156..1703082(-) (amiD) [Streptococcus anginosus strain VSI52]
MATIDKTKFQFVKRDDFASETIDAPAYSYWKSVMRQFLKKKSTVIMLGILIAIILMSFIYPIFSDFDFNDVSKVNDFGAR
YIKPNGQYWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGIVIGGIWGISKTVDRIMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMTITGWVGIAYTIRIQIMRYRDLEYNLASRTLGTPTLKIIVKNIMPQLVSVIVTTASQLLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=789490 PUW62_RS08595 WP_024052699.1 1702156..1703082(-) (amiD) [Streptococcus anginosus strain VSI52]
ATGGCTACAATTGATAAGACTAAGTTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAACAATTGATGCTCCAGCCTA
TTCTTACTGGAAATCAGTTATGCGTCAGTTCCTAAAAAAGAAATCAACAGTTATCATGTTGGGAATTTTGATCGCTATTA
TTTTGATGAGTTTCATTTATCCGATTTTCTCAGATTTTGACTTTAACGATGTCAGCAAGGTGAATGATTTCGGTGCGCGT
TATATTAAACCAAACGGTCAATATTGGTTTGGTACAGATAGCAACGGAAAATCTCTTTTTGACGGAGTATGGTTTGGAGC
TCGTAACTCTATCCTCATTTCTGTCATTGCAACCGTGATTAACTTAGTTATTGGTATTGTGATTGGTGGTATCTGGGGAA
TTTCAAAAACCGTTGACCGTATCATGATGGAAGTGTACAATATCATTTCTAACATCCCATCTCTCTTGATTGTCATTGTC
TTGACTTATTCAATTGGTGCTGGTTTCTGGAACTTGATTTTTGCTATGACCATCACAGGTTGGGTTGGGATTGCTTATAC
AATTCGTATCCAAATCATGCGTTATCGCGACTTGGAATATAACCTTGCCAGCCGAACTTTGGGTACGCCAACACTGAAAA
TCATTGTGAAAAATATCATGCCACAATTGGTTTCTGTTATTGTGACAACGGCTTCGCAATTGCTTCCAAGTTTCATTTCT
TATGAAGCATTTCTATCGTTCTTTGGTTTAGGGCTTCCTGTCACAGTACCAAGTTTGGGACGGTTAATTTCAGATTATTC
ACAAAACGTGACAACAAATGCGTATCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTTTCTCTTTCATTGTTCGTTG
TCGGTCAAAACTTAGCGGACGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

87.338

100

0.873
  amiD Streptococcus thermophilus LMG 18311

85.39

100

0.854
  amiD Streptococcus thermophilus LMD-9

85.39

100

0.854