Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   PUW62_RS08585 Genome accession   NZ_CP118046
Coordinates   1700146..1701069 (-) Length   307 a.a.
NCBI ID   WP_024052698.1    Uniprot ID   A0A412PMR5
Organism   Streptococcus anginosus strain VSI52     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1695146..1706069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW62_RS08565 (PUW62_08565) - 1696704..1698161 (+) 1458 WP_274996965.1 sucrose-6-phosphate hydrolase -
  PUW62_RS08570 (PUW62_08570) - 1698142..1699107 (+) 966 WP_003031743.1 LacI family DNA-binding transcriptional regulator -
  PUW62_RS10760 - 1699181..1700003 (-) 823 Protein_1647 Cof-type HAD-IIB family hydrolase -
  PUW62_RS08585 (PUW62_08585) amiF 1700146..1701069 (-) 924 WP_024052698.1 ATP-binding cassette domain-containing protein Regulator
  PUW62_RS08590 (PUW62_08590) amiE 1701080..1702147 (-) 1068 WP_003026176.1 ABC transporter ATP-binding protein Regulator
  PUW62_RS08595 (PUW62_08595) amiD 1702156..1703082 (-) 927 WP_024052699.1 oligopeptide ABC transporter permease OppC Regulator
  PUW62_RS08600 (PUW62_08600) amiC 1703082..1704578 (-) 1497 WP_024052700.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34870.06 Da        Isoelectric Point: 6.5117

>NTDB_id=789488 PUW62_RS08585 WP_024052698.1 1700146..1701069(-) (amiF) [Streptococcus anginosus strain VSI52]
MPEKLVEVKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSHGEIFFEGKKINGKKSKE
EESEIIRKIQMIFQDPAASLNERATVDYIISEGLYNFHLFKDEEERKKKVKDIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQSLLSAVPIPDPILERKKVLKVYDANHHDYSTDKPEMVEIRPGHFVWANKAEVEKYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=789488 PUW62_RS08585 WP_024052698.1 1700146..1701069(-) (amiF) [Streptococcus anginosus strain VSI52]
ATGCCTGAAAAATTAGTAGAAGTTAAAGATTTGGAAATTTCCTTCGGTGAGGGAAGCAAGAAATTTGTTGCTGTTAAAAA
TGCTAATTTCTTTATCAATAAAGGAGAAACGTTTTCACTTGTAGGAGAATCTGGTTCTGGTAAAACGACAATTGGTCGTG
CGATTATTGGTTTAAATGATACGAGTCATGGAGAGATTTTCTTTGAAGGGAAAAAAATCAATGGCAAAAAATCAAAAGAA
GAAGAGTCAGAAATCATTCGTAAAATTCAAATGATTTTCCAGGATCCTGCTGCTAGTTTGAATGAACGTGCGACAGTTGA
TTATATCATTTCGGAAGGCTTGTATAATTTCCATTTATTTAAAGATGAAGAAGAACGCAAGAAAAAAGTGAAAGATATTA
TTCATGAAGTTGGATTGTTATCAGAGCATTTAACACGTTACCCGCATGAATTTTCTGGTGGTCAACGTCAGCGGATTGGG
ATTGCCCGTGCGCTTGTTATGGAACCAGATTTTGTCATTGCAGATGAGCCGATTTCAGCTTTGGACGTGTCTGTGCGGGC
ACAAGTTTTAAACCTACTGAAAAAATTCCAAAAAGAATTAGGTTTGACTTATCTCTTTATTGCTCACGATTTATCGGTTG
TACGCTTCATTTCAGATCGTATTGCGGTTATTTATAAGGGTGTGATTGTCGAAGTAGCTGAAACAGAAGAACTCTTTAAC
AATCCAATTCATCCTTATACTCAGTCTTTATTGTCAGCTGTGCCAATTCCAGATCCAATCTTGGAACGGAAGAAAGTGTT
GAAAGTCTATGATGCTAATCATCATGATTATTCAACGGATAAGCCAGAAATGGTCGAAATTCGTCCTGGACACTTTGTGT
GGGCTAATAAAGCAGAAGTTGAAAAATATAAAAAAGAATTATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PMR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

87.908

99.674

0.876
  amiF Streptococcus salivarius strain HSISS4

87.908

99.674

0.876
  amiF Streptococcus thermophilus LMD-9

87.582

99.674

0.873