Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   Q7652_RS09475 Genome accession   NZ_CP131620
Coordinates   1809063..1809491 (+) Length   142 a.a.
NCBI ID   WP_106158859.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 2020N08-318     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1804063..1814491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7652_RS09455 (Q7652_09510) metG 1805766..1807820 (+) 2055 WP_010359662.1 methionine--tRNA ligase -
  Q7652_RS09460 (Q7652_09515) - 1807895..1808203 (-) 309 Protein_1840 NAD(P)-dependent oxidoreductase -
  Q7652_RS09465 (Q7652_09520) - 1808207..1808542 (+) 336 Protein_1841 pilin -
  Q7652_RS09470 (Q7652_09525) - 1808582..1808991 (+) 410 Protein_1842 pilin -
  Q7652_RS09475 (Q7652_09530) pilE 1809063..1809491 (+) 429 WP_106158859.1 pilin Machinery gene
  Q7652_RS09480 (Q7652_09535) - 1809482..1809814 (+) 333 Protein_1844 pilin -
  Q7652_RS09485 (Q7652_09540) - 1809841..1810265 (+) 425 Protein_1845 pilin -
  Q7652_RS09490 (Q7652_09545) - 1810380..1810733 (+) 354 Protein_1846 pilin -
  Q7652_RS09495 (Q7652_09550) thiC 1811222..1813123 (-) 1902 WP_047918965.1 phosphomethylpyrimidine synthase ThiC -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15378.24 Da        Isoelectric Point: 7.8150

>NTDB_id=789428 Q7652_RS09475 WP_106158859.1 1809063..1809491(+) (pilE) [Neisseria gonorrhoeae strain 2020N08-318]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGKWPADNGAAGVASPATDIKGKYVKEVEVKNGVVTATMKSDGVNKEI
KNKKLSLWAKRENGSVKWFCGQPVTRDNKANDTVADAADKDKIETKHLPSTCRDESSLPGIT

Nucleotide


Download         Length: 429 bp        

>NTDB_id=789428 Q7652_RS09475 WP_106158859.1 1809063..1809491(+) (pilE) [Neisseria gonorrhoeae strain 2020N08-318]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCCCCCGCCACCGACATCAAAG
GCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATC
AAAAACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGA
CAACAAAGCCAACGACACCGTTGCCGACGCCGCCGACAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCG
ATGAATCATCGTTGCCGGGTATTACCTGA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

74.638

97.183

0.725
  pilE Neisseria gonorrhoeae strain FA1090

70.29

97.183

0.683