Detailed information NTG0789339

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PUW63_RS20905
• Genome accession: NZ_CP118038
• Coordinates: 4239637..4240437 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain VSI78
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4234637..4245437

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PUW63_RS20870 (PUW63_20805)	gspH	4234793..4235308 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
PUW63_RS20875 (PUW63_20810)	gspI	4235305..4235670 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
PUW63_RS20880 (PUW63_20815)	gspJ	4235667..4236263 (+)	597	WP_004191953.1	type II secretion system minor pseudopilin GspJ	-
PUW63_RS20885 (PUW63_20820)	gspK	4236260..4237246 (+)	987	WP_023307453.1	type II secretion system minor pseudopilin GspK	-
PUW63_RS20890 (PUW63_20825)	gspL	4237233..4238426 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
PUW63_RS20895 (PUW63_20830)	-	4238419..4238904 (+)	486	WP_023307455.1	type II secretion system protein M	-
PUW63_RS20900 (PUW63_20835)	-	4238894..4239640 (+)	747	WP_004145897.1	type II secretion system protein N	-
PUW63_RS20905 (PUW63_20840)	pilD	4239637..4240437 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
PUW63_RS20910 (PUW63_20845)	hrpB	4240485..4242914 (-)	2430	WP_004191962.1	ATP-dependent helicase HrpB	-
PUW63_RS20915 (PUW63_20850)	thpR	4242987..4243523 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
PUW63_RS20920 (PUW63_20855)	sfsA	4243523..4244239 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
PUW63_RS20925 (PUW63_20860)	dksA	4244402..4244857 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=789339 PUW63_RS20905 WP_004191960.1 4239637..4240437(+) (pilD) [Klebsiella pneumoniae strain VSI78]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=789339 PUW63_RS20905 WP_004191960.1 4239637..4240437(+) (pilD) [Klebsiella pneumoniae strain VSI78]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421