Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PT671_RS18330 Genome accession   NZ_CP118021
Coordinates   3647653..3648456 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3642653..3653456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS18310 - 3642765..3643610 (+) 846 WP_003226418.1 TlyA family RNA methyltransferase -
  PT671_RS18315 argR 3643707..3644156 (+) 450 WP_003226420.1 arginine repressor ArgR -
  PT671_RS18320 recN 3644192..3645922 (+) 1731 WP_003226422.1 DNA repair protein RecN Machinery gene
  PT671_RS18325 spoIVB 3646096..3647376 (+) 1281 WP_003226424.1 SpoIVB peptidase -
  PT671_RS18330 spo0A 3647653..3648456 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  PT671_RS18335 - 3648997..3650115 (-) 1119 WP_003226431.1 NADH-dependent flavin oxidoreductase -
  PT671_RS18340 - 3650188..3650322 (-) 135 WP_003226433.1 hypothetical protein -
  PT671_RS18345 - 3650649..3650945 (+) 297 WP_032727414.1 hypothetical protein -
  PT671_RS18350 - 3650965..3651585 (+) 621 WP_079996401.1 N-acetylmuramoyl-L-alanine amidase family protein -
  PT671_RS18355 - 3651665..3652396 (+) 732 WP_003226439.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=789194 PT671_RS18330 WP_003226427.1 3647653..3648456(+) (spo0A) [Bacillus spizizenii strain B-354]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=789194 PT671_RS18330 WP_003226427.1 3647653..3648456(+) (spo0A) [Bacillus spizizenii strain B-354]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGTGTTGCCTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTGGATATTATTATGCCGCATTTGGATGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCTTCCTATTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGACATATTCGCCAGGTCAGCGGAAATGCCAGCAGCGTGACGCATCGTGCGC
CATCATCGCAAAGCAGCATTATACGCAGCAGCCAGCCGGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCCATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAGTTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGGAACATTGATTCCATTTCCTCGTTGTTCGGCTATACTGTC
AGCATGACAAAAGCCAAACCTACCAACAGCGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1