Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PT671_RS18320 Genome accession   NZ_CP118021
Coordinates   3644192..3645922 (+) Length   576 a.a.
NCBI ID   WP_003226422.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3639192..3650922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS18295 - 3639552..3639806 (+) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -
  PT671_RS18300 - 3639796..3640686 (+) 891 WP_003226410.1 polyprenyl synthetase family protein -
  PT671_RS18305 dxs 3640867..3642768 (+) 1902 WP_003226415.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PT671_RS18310 - 3642765..3643610 (+) 846 WP_003226418.1 TlyA family RNA methyltransferase -
  PT671_RS18315 argR 3643707..3644156 (+) 450 WP_003226420.1 arginine repressor ArgR -
  PT671_RS18320 recN 3644192..3645922 (+) 1731 WP_003226422.1 DNA repair protein RecN Machinery gene
  PT671_RS18325 spoIVB 3646096..3647376 (+) 1281 WP_003226424.1 SpoIVB peptidase -
  PT671_RS18330 spo0A 3647653..3648456 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  PT671_RS18335 - 3648997..3650115 (-) 1119 WP_003226431.1 NADH-dependent flavin oxidoreductase -
  PT671_RS18340 - 3650188..3650322 (-) 135 WP_003226433.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64578.34 Da        Isoelectric Point: 4.7658

>NTDB_id=789193 PT671_RS18320 WP_003226422.1 3644192..3645922(+) (recN) [Bacillus spizizenii strain B-354]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLESGHPVFDVC
TEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLRLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYGSLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSVKKELDSVGKDVAVEAANVSQIRKAWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPMVNGQPVQLTDQGIDSVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=789193 PT671_RS18320 WP_003226422.1 3644192..3645922(+) (recN) [Bacillus spizizenii strain B-354]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTCACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGACGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTCAGATATGGAGAGACAAAAGCCGAGCTTGAAGGGCTGTTTCTATTGGAGAGCGGCCATCCCGTTTTTGACGTATGC
ACTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGAAAAAGCGTTTGCCG
TGTTAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAATCATCTCCGGCTTTTGGATAAGTTTGCCGGAGCCGAAGTAGAAAGCGCGCTTCAA
GCGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTTAAAAAGCTAAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACCGCCTAGACCTCATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTCGAGCTTAATGAAGATGAACAGCTCC
AAGAAGAACGCCAGCAAATTTCAAACTTTGAGAAGATCTATGGATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGACTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATATCCGATATTAACGAACCGCTGAAAAAACT
GTCTGAGAGTGTGTCGAACTCCTACTATCTTTTGGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAACGCCTGAATTATATTGAGACGCGTCTTAATGAAATTAAACAGCTGAAACGAAAATACGGTGCAACTGTT
GAGGACATTTTGGAATACGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCATCTTCAAAGCGT
GAAGAAGGAGCTTGACTCAGTCGGCAAAGATGTGGCGGTGGAAGCGGCAAATGTTTCACAAATCAGGAAAGCATGGGCGA
AAAAGCTGGCCGATGAGATTCATCGAGAATTAAAAAGCCTCTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCTCGCAATGAGGAGGCGCCGATGGTAAACGGCCAGCCTGTTCAGCTGACTGACCAAGGAATTGATTCGGT
CAAGTTTTTAATTTCAACTAACACAGGCGAGCCTCTGAAATCCCTTTCGAAAGTCGCTTCCGGAGGAGAGCTGTCCCGGG
TAATGCTTGCCATAAAAAGCATTTTTTCCTCGCAGCAGGATGTGACGTCAATTATATTCGATGAGGTGGATACCGGTGTA
AGCGGCAGAGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTCTCAATAGGATCACAAGTGCTGTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTGAAAGACGGCAGAACCACGACACGTGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGTGGAAATCGGGCGCATGATTGCCGGAGTCGAAGTAACAGACTTGACGAAACGC
CATGCGAAAGAACTTCTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.049

100

0.97