Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PT671_RS07875 Genome accession   NZ_CP118021
Coordinates   1625774..1626223 (+) Length   149 a.a.
NCBI ID   WP_136975843.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1620774..1631223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS07855 hxlR 1621976..1622338 (-) 363 WP_003224931.1 transcriptional activator HxlR -
  PT671_RS07860 hxlA 1622569..1623201 (+) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  PT671_RS07865 hxlB 1623206..1623763 (+) 558 WP_003224927.1 6-phospho-3-hexuloisomerase -
  PT671_RS07870 tlpC 1623876..1625600 (+) 1725 WP_003224925.1 methyl-accepting chemotaxis protein TlpC -
  PT671_RS07875 nucA/comI 1625774..1626223 (+) 450 WP_136975843.1 DNA-entry nuclease Machinery gene
  PT671_RS07880 nin/comJ 1626246..1626644 (+) 399 WP_003224919.1 DNA-entry nuclease inhibitor Regulator
  PT671_RS07885 bglC 1626681..1628114 (-) 1434 WP_003224917.1 6-phospho-beta-glucosidase -
  PT671_RS07890 - 1628187..1628915 (-) 729 WP_003224881.1 AAA family ATPase -
  PT671_RS07895 - 1628935..1629276 (-) 342 WP_003224880.1 DUF3147 family protein -
  PT671_RS07900 - 1629264..1629686 (-) 423 WP_003224879.1 MarR family winged helix-turn-helix transcriptional regulator -
  PT671_RS07905 - 1629821..1630153 (-) 333 WP_003224878.1 YckD family protein -
  PT671_RS07910 - 1630236..1630691 (-) 456 WP_003224877.1 RDD family protein -
  PT671_RS07915 - 1630688..1630815 (-) 128 Protein_1545 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16392.32 Da        Isoelectric Point: 4.3043

>NTDB_id=789146 PT671_RS07875 WP_136975843.1 1625774..1626223(+) (nucA/comI) [Bacillus spizizenii strain B-354]
MNITMDIIKTILLVIVVIAAAAVGLIKGDFFSADQKTSQTEEYDETIALPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=789146 PT671_RS07875 WP_136975843.1 1625774..1626223(+) (nucA/comI) [Bacillus spizizenii strain B-354]
GTGAACATCACGATGGACATCATAAAAACGATACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCGGCCTGATCAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACTGAAGAATATGACGAAACAATTGCCCTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAACATATTAAGGATGCGATAAATGAGGGGCACTCTGATGTGTGCACCATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAAGACGTACCGCCAAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCTGCTGACAACCGCGGTGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGACTATCCAGACGGCACAAAGGTTTTATTCACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

93.96

100

0.94