Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PT671_RS07665 Genome accession   NZ_CP118021
Coordinates   1564149..1565099 (-) Length   316 a.a.
NCBI ID   WP_003225000.1    Uniprot ID   -
Organism   Bacillus spizizenii strain B-354     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559149..1570099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS07645 - 1560008..1561432 (+) 1425 WP_003225009.1 MDR family MFS transporter -
  PT671_RS07650 yclQ 1561479..1562435 (-) 957 WP_003225007.1 petrobactin ABC transporter substrate-binding protein YclQ -
  PT671_RS07655 yclP 1562457..1563215 (-) 759 WP_003225005.1 petrobactin ABC transporter ATP-binding protein YclP -
  PT671_RS07660 yclO 1563209..1564156 (-) 948 WP_003225003.1 petrobactin ABC transporter permease YclO -
  PT671_RS07665 ceuB 1564149..1565099 (-) 951 WP_003225000.1 petrobactin ABC transporter permease YclN Machinery gene
  PT671_RS07670 - 1565484..1566848 (+) 1365 WP_003224998.1 aspartate kinase -
  PT671_RS07675 - 1566997..1567104 (+) 108 WP_003224996.1 YjcZ family sporulation protein -
  PT671_RS07680 phrC 1567203..1567325 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  PT671_RS07685 rapC 1567309..1568457 (-) 1149 WP_003224987.1 response regulator aspartate phosphatase RapC Regulator
  PT671_RS07690 yclK 1568619..1570040 (-) 1422 WP_079996289.1 two-component system sensor histidine kinase YclK -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34936.32 Da        Isoelectric Point: 9.9364

>NTDB_id=789143 PT671_RS07665 WP_003225000.1 1564149..1565099(-) (ceuB) [Bacillus spizizenii strain B-354]
MKLRYLFILLIILGVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLFSIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=789143 PT671_RS07665 WP_003225000.1 1564149..1565099(-) (ceuB) [Bacillus spizizenii strain B-354]
ATGAAGTTACGTTACTTATTTATTCTACTTATCATATTAGGAGTCACGTCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACACTGTTTGCAAGCCGTTTGCCGCGATTGTTCAGCATTGTCA
TCGCGGGATTAAGTATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAACAAATTTGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCTCGGCTCGGTATTTTAATTTCCTTGCTGCTGTTCACATCCGCGAGTCCTTTAATGAAAATGCT
GGTCGCGTTTGTCTTTGCTCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTCCAAGGAGACTTCTCTTTAGTCGTAAAAGGAAGATACGAGCTACTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TGAAGTACAAGCGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTTCCATTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAACAGTTTGCCGCACAC
GGCGCTATTGGGAGCGGTTTTTGTGCTCTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTACGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525