Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Q7260_RS05545 Genome accession   NZ_CP131440
Coordinates   1041605..1042156 (+) Length   183 a.a.
NCBI ID   WP_100626282.1    Uniprot ID   -
Organism   Campylobacter jejuni strain S36     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1036605..1047156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7260_RS05510 (Q7260_05510) - 1036794..1037219 (+) 426 WP_002859154.1 N-acetyltransferase -
  Q7260_RS05515 (Q7260_05515) - 1037283..1037904 (+) 622 Protein_1067 NAD(P)H-dependent oxidoreductase -
  Q7260_RS05520 (Q7260_05520) - 1037904..1038509 (+) 606 WP_057033691.1 NAD(P)H-dependent oxidoreductase -
  Q7260_RS05525 (Q7260_05525) pgsA 1038634..1039170 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  Q7260_RS05530 (Q7260_05530) rseP 1039167..1040273 (+) 1107 WP_002934663.1 RIP metalloprotease RseP -
  Q7260_RS05535 (Q7260_05535) - 1040266..1041132 (+) 867 WP_070275490.1 VirK family antimicrobial peptide resistance protein -
  Q7260_RS05540 (Q7260_05540) rpsF 1041219..1041596 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  Q7260_RS05545 (Q7260_05545) ssb 1041605..1042156 (+) 552 WP_100626282.1 single-stranded DNA-binding protein Machinery gene
  Q7260_RS05550 (Q7260_05550) rpsR 1042167..1042427 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  Q7260_RS05555 (Q7260_05555) lon 1042487..1044862 (-) 2376 WP_100626281.1 endopeptidase La -
  Q7260_RS05560 (Q7260_05560) - 1044879..1045526 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  Q7260_RS05565 (Q7260_05565) fliW 1045687..1046076 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  Q7260_RS05570 (Q7260_05570) proC 1046076..1046807 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  Q7260_RS05575 (Q7260_05575) ctsT 1046804..1047106 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20740.63 Da        Isoelectric Point: 5.0431

>NTDB_id=789077 Q7260_RS05545 WP_100626282.1 1041605..1042156(+) (ssb) [Campylobacter jejuni strain S36]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNTPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=789077 Q7260_RS05545 WP_100626282.1 1041605..1042156(+) (ssb) [Campylobacter jejuni strain S36]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATACTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGCGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361