Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   PUT72_RS12380 Genome accession   NZ_CP117994
Coordinates   2649955..2650569 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 20220413_2     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2644955..2655569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUT72_RS12360 (PUT72_12360) - 2645795..2647465 (-) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  PUT72_RS12365 (PUT72_12365) can 2647747..2648415 (+) 669 WP_005379996.1 carbonate dehydratase -
  PUT72_RS12370 (PUT72_12370) tnpA 2648495..2648929 (-) 435 WP_017633711.1 IS200/IS605 family transposase -
  PUT72_RS12375 (PUT72_12375) hpt 2649105..2649635 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  PUT72_RS12380 (PUT72_12380) opaR 2649955..2650569 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  PUT72_RS12385 (PUT72_12385) lpdA 2650715..2652142 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  PUT72_RS12390 (PUT72_12390) aceF 2652410..2654299 (-) 1890 WP_262645184.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=789028 PUT72_RS12380 WP_005379994.1 2649955..2650569(+) (opaR) [Vibrio alginolyticus strain 20220413_2]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=789028 PUT72_RS12380 WP_005379994.1 2649955..2650569(+) (opaR) [Vibrio alginolyticus strain 20220413_2]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711