Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   PUN50_RS21730 Genome accession   NZ_CP117989
Coordinates   1091804..1093105 (-) Length   433 a.a.
NCBI ID   WP_256859669.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20220413_1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1086804..1098105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS21715 (PUN50_21715) - 1087843..1088391 (+) 549 WP_005426812.1 GNAT family N-acetyltransferase -
  PUN50_RS21720 (PUN50_21720) - 1088731..1089348 (-) 618 WP_274292137.1 HAD family hydrolase -
  PUN50_RS21725 (PUN50_21725) cqsS 1089652..1091697 (+) 2046 WP_045369090.1 response regulator Regulator
  PUN50_RS21730 (PUN50_21730) cqsA 1091804..1093105 (-) 1302 WP_256859669.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  PUN50_RS21735 (PUN50_21735) ylqF 1093395..1094339 (-) 945 WP_103411635.1 ribosome biogenesis GTPase YlqF -
  PUN50_RS21740 (PUN50_21740) - 1094660..1095646 (-) 987 WP_274292138.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 433 a.a.        Molecular weight: 48881.78 Da        Isoelectric Point: 6.3997

>NTDB_id=788986 PUN50_RS21730 WP_256859669.1 1091804..1093105(-) (cqsA) [Vibrio campbellii strain 20220413_1]
MRSLQAHANLCNLTNDTELILVKLYNCQRWRFPVLRRELIMSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKR
PQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMSAIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLL
QTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMNHLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFD
CALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAKTFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRL
EKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQIVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNI
IRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1302 bp        

>NTDB_id=788986 PUN50_RS21730 WP_256859669.1 1091804..1093105(-) (cqsA) [Vibrio campbellii strain 20220413_1]
ATGCGGAGTTTGCAGGCGCACGCAAACTTATGCAACTTGACTAATGACACCGAGCTCATATTGGTCAAACTATATAACTG
TCAGCGCTGGCGTTTTCCTGTGTTACGAAGAGAACTTATTATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTG
TTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGAGCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGA
CCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACTTGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCG
TGATGCTATCTACGAGCACGATGATAACGTTGTCATGTCTGCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTG
AAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCTATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTA
CAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATTTCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGC
AGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAACCATTTGCGCAAGCAGATACAGCGTCACGGCTCTGGCGTTA
TCGTTGTGGATTCGGTCTATAGCACGATAGGTACGATCGCCCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGAT
TGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGCATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTAGAACT
CACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAAACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAA
AGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCATCTTTAGTTCGACGGTCCTGCCACAAGAGATCGTTCGACTT
GAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGCGAACCATGCTGTTCAATCGCGCTAAGGAGCTCAGAACAGG
CCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAAATTGTGGCGTTAGAATGCGGTAGTGAGCGAAATACGGAAC
GAGTACGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGCTGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATT
ATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACATTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCA
CCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(87-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.179

90.069

0.515