Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   PUN50_RS21725 Genome accession   NZ_CP117989
Coordinates   1089652..1091697 (+) Length   681 a.a.
NCBI ID   WP_045369090.1    Uniprot ID   A0AAQ2Y384
Organism   Vibrio campbellii strain 20220413_1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084652..1096697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS21705 (PUN50_21705) dcuC 1084682..1086049 (-) 1368 WP_274292135.1 anaerobic C4-dicarboxylate transporter DcuC -
  PUN50_RS21710 (PUN50_21710) - 1086425..1087549 (-) 1125 WP_274292136.1 acyl-CoA desaturase -
  PUN50_RS21715 (PUN50_21715) - 1087843..1088391 (+) 549 WP_005426812.1 GNAT family N-acetyltransferase -
  PUN50_RS21720 (PUN50_21720) - 1088731..1089348 (-) 618 WP_274292137.1 HAD family hydrolase -
  PUN50_RS21725 (PUN50_21725) cqsS 1089652..1091697 (+) 2046 WP_045369090.1 response regulator Regulator
  PUN50_RS21730 (PUN50_21730) cqsA 1091804..1093105 (-) 1302 WP_256859669.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  PUN50_RS21735 (PUN50_21735) ylqF 1093395..1094339 (-) 945 WP_103411635.1 ribosome biogenesis GTPase YlqF -
  PUN50_RS21740 (PUN50_21740) - 1094660..1095646 (-) 987 WP_274292138.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 77825.66 Da        Isoelectric Point: 5.5065

>NTDB_id=788985 PUN50_RS21725 WP_045369090.1 1089652..1091697(+) (cqsS) [Vibrio campbellii strain 20220413_1]
MDAIRKVYQYAEPNLTLVGWMGFVGFPIYYIVWEFMFPQPYENLPLRILCSVLFFGIIYRNRTPFEWRRFLPAYYQVVTT
LCLPCFFFYMLLMNNWSNVWVMSFMSAIFLHILLVHITSVMFAQTFAGIGLATFFAWVAQGFHLELTMDWTHVPIFLFIY
LFGNLFYFRNQVEHEAKVSIAKSFGAGIAHEMRNPLSGLLTSIDVIQSVLPNPKEGKKEQYTLSDEDVTLLREVSSDAMK
IIHSGNETIDLLLTSIDENRVSRSTFKKHSAQSVVESAIESFSYKRSTDRFAISLDVRSEFDFLGSDTLLKYVMYNLFKN
AFHHRSSEDFHIHVTMYSDEFANQIVVTDNGSGIAPEVLQSIFQDFYTTGKSGNYGLGLPFCKKVMRSFGGDIRCQSEVG
EWSQFTMTFPTIGSSAVKEIKSELTKLKTILFVSEQNILVSKVTDIARFMGFELTVLDVPAVLKKKEYEFEFDLILIDME
SLDARGSHIDKVESLLSFTEARIVYMFEHHPIQRARSVSFEPIWVETQAWLLNTRATIDRLLYDANYVVPSMPAKPLDST
NKRTIMVVDDNESLRKFTAMLLEKQGFEVIQTEDGLQAINALNENNVDLILMDIEMPVMDGVEASRQIRGSNKAYASVPI
IAHTGDSSPITLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=788985 PUN50_RS21725 WP_045369090.1 1089652..1091697(+) (cqsS) [Vibrio campbellii strain 20220413_1]
ATGGACGCGATTCGCAAAGTATATCAGTACGCAGAACCCAACCTTACCCTTGTAGGATGGATGGGCTTCGTCGGCTTTCC
TATTTACTACATCGTTTGGGAGTTCATGTTCCCGCAGCCTTACGAAAACCTACCGCTTCGTATTCTCTGCTCAGTCTTAT
TCTTCGGCATCATTTATCGTAATCGTACGCCATTTGAGTGGCGTAGGTTCTTACCCGCCTATTATCAAGTGGTCACAACG
CTCTGCTTGCCTTGCTTCTTCTTTTACATGTTGCTGATGAACAACTGGTCGAATGTATGGGTGATGTCGTTTATGTCGGC
GATTTTTCTGCACATTCTGCTCGTGCATATCACATCGGTGATGTTTGCCCAGACATTTGCGGGAATTGGTCTGGCGACGT
TTTTTGCTTGGGTAGCACAGGGGTTTCACCTCGAACTCACCATGGATTGGACGCACGTACCGATCTTCTTGTTTATTTAT
CTCTTTGGTAACTTGTTCTATTTCCGAAACCAGGTAGAGCATGAAGCAAAAGTTTCAATCGCAAAGTCTTTTGGGGCAGG
TATCGCCCACGAAATGCGAAACCCACTTAGTGGTTTATTAACTTCTATCGATGTCATTCAATCCGTATTGCCAAATCCGA
AAGAGGGCAAGAAAGAGCAGTACACGTTAAGTGATGAAGACGTGACACTGTTACGAGAAGTCAGCAGTGACGCAATGAAG
ATCATCCATTCAGGAAACGAAACCATTGATTTGCTTCTTACCTCAATTGACGAGAACCGTGTGTCTCGCTCGACATTTAA
AAAGCACTCTGCACAATCTGTTGTTGAGAGTGCGATTGAAAGTTTCAGTTACAAACGATCGACAGACCGTTTTGCTATCT
CCTTGGATGTAAGAAGTGAGTTCGATTTCTTGGGCAGCGATACATTGCTTAAGTATGTGATGTACAACTTGTTCAAGAAC
GCCTTCCACCACCGTAGTTCAGAAGACTTCCACATACACGTCACCATGTACAGTGATGAATTTGCCAACCAAATTGTGGT
GACTGATAACGGTTCGGGCATTGCACCAGAAGTTCTTCAAAGTATTTTCCAAGATTTCTACACTACGGGTAAGTCAGGAA
ACTATGGCCTTGGATTGCCTTTCTGTAAGAAAGTGATGCGTTCATTTGGTGGTGATATTCGTTGCCAATCAGAAGTCGGC
GAGTGGTCTCAGTTCACGATGACTTTCCCTACGATTGGCTCAAGCGCAGTCAAAGAGATTAAGAGTGAGCTAACCAAGCT
AAAAACGATTTTGTTTGTGAGTGAGCAAAACATCTTAGTTTCGAAAGTGACGGACATTGCTCGTTTTATGGGATTCGAAC
TCACGGTTCTCGATGTTCCTGCGGTTCTTAAAAAGAAAGAATACGAGTTCGAGTTTGATTTGATCCTGATCGATATGGAG
AGTTTAGACGCCCGTGGCAGCCATATAGATAAGGTTGAATCGTTACTGTCGTTCACTGAAGCTCGCATTGTTTACATGTT
TGAGCACCATCCAATTCAAAGAGCGAGAAGCGTTTCTTTTGAACCTATTTGGGTAGAGACACAAGCCTGGCTTCTGAATA
CTCGAGCGACCATCGACCGTTTACTGTATGACGCTAATTATGTTGTTCCATCGATGCCAGCGAAGCCGCTCGATTCAACA
AACAAGCGAACCATTATGGTGGTTGACGATAATGAGTCTTTACGCAAGTTTACGGCCATGCTGCTTGAGAAGCAGGGTTT
TGAAGTGATCCAAACCGAAGATGGGCTGCAGGCAATCAACGCATTGAATGAGAACAATGTTGACTTAATCCTAATGGACA
TCGAAATGCCGGTGATGGATGGTGTAGAAGCATCTCGTCAAATCAGAGGTTCAAATAAGGCGTACGCTTCGGTGCCTATT
ATTGCGCATACTGGTGATAGCTCACCGATAACACTGGACAAGATTGGTTCATCTGGCATGTCGGATTTCATCGTTAAACC
TGCGGATAAGAACAGGTTGTTCGACAAGATTGCGAACTGGATTTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(308-410)

Response regulator receiver domain (Response_reg)

(565-677)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.175

100

0.485