Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   PUN35_RS08655 Genome accession   NZ_CP117986
Coordinates   1565384..1566337 (-) Length   317 a.a.
NCBI ID   WP_014479436.1    Uniprot ID   -
Organism   Bacillus sp. N3378-2at     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1560384..1571337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN35_RS08625 appD 1560515..1561501 (-) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -
  PUN35_RS08630 - 1561693..1562478 (-) 786 WP_014479439.1 DUF2268 domain-containing protein -
  PUN35_RS08635 fabF 1562554..1563795 (-) 1242 WP_014479438.1 beta-ketoacyl-ACP synthase II -
  PUN35_RS08640 fabH 1563818..1564756 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  PUN35_RS08645 yjzB 1564921..1565148 (+) 228 WP_031600361.1 spore coat protein YjzB -
  PUN35_RS08650 comZ 1565178..1565369 (-) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  PUN35_RS08655 med 1565384..1566337 (-) 954 WP_014479436.1 transcriptional regulator Med Regulator
  PUN35_RS08660 - 1566428..1566985 (-) 558 WP_014479435.1 hypothetical protein -
  PUN35_RS08665 - 1567067..1567801 (-) 735 WP_014479433.1 hypothetical protein -
  PUN35_RS08670 - 1568050..1568235 (+) 186 WP_003245236.1 YjzD family protein -
  PUN35_RS08675 - 1568281..1568460 (-) 180 WP_003245356.1 YjzC family protein -
  PUN35_RS08680 - 1568638..1569788 (+) 1151 WP_087614160.1 IS3 family transposase -
  PUN35_RS08685 argF 1569836..1570795 (-) 960 WP_014479432.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.88 Da        Isoelectric Point: 4.6652

>NTDB_id=788900 PUN35_RS08655 WP_014479436.1 1565384..1566337(-) (med) [Bacillus sp. N3378-2at]
MITRLVMIFSVLLLLSGCGKTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=788900 PUN35_RS08655 WP_014479436.1 1565384..1566337(-) (med) [Bacillus sp. N3378-2at]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGAAAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTCCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994