Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PT798_RS11985 Genome accession   NZ_CP117979
Coordinates   2461210..2461605 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B-41012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2456210..2466605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT798_RS11960 thiE 2456673..2457314 (-) 642 WP_000483155.1 thiamine phosphate synthase -
  PT798_RS11965 thiM 2457307..2458107 (-) 801 WP_001108492.1 hydroxyethylthiazole kinase -
  PT798_RS11970 thiD 2458091..2458921 (-) 831 WP_000594960.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  PT798_RS11975 tenA 2458914..2459603 (-) 690 WP_000396077.1 thiaminase II -
  PT798_RS11980 sceD 2460127..2460822 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  PT798_RS11985 ssb 2461210..2461605 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  PT798_RS11990 - 2461799..2462239 (+) 441 WP_000846746.1 YwpF-like family protein -
  PT798_RS11995 fabZ 2462298..2462738 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  PT798_RS12000 murA 2462772..2464037 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  PT798_RS12005 - 2464148..2464381 (-) 234 WP_000384523.1 DUF1146 family protein -
  PT798_RS12010 - 2464513..2464605 (-) 93 WP_001790611.1 hypothetical protein -
  PT798_RS12015 - 2464943..2465347 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=788832 PT798_RS11985 WP_000932694.1 2461210..2461605(-) (ssb) [Staphylococcus aureus strain B-41012]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=788832 PT798_RS11985 WP_000932694.1 2461210..2461605(-) (ssb) [Staphylococcus aureus strain B-41012]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992