Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   PT798_RS09605 Genome accession   NZ_CP117979
Coordinates   2005536..2006222 (-) Length   228 a.a.
NCBI ID   WP_072361794.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B-41012     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2000536..2011222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT798_RS09585 rpsT 2001450..2001701 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  PT798_RS09590 holA 2001746..2002720 (-) 975 WP_031587652.1 DNA polymerase III subunit delta -
  PT798_RS09595 comEC 2002777..2004978 (-) 2202 WP_025174327.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PT798_RS09600 - 2004983..2005444 (-) 462 WP_000439693.1 ComE operon protein 2 -
  PT798_RS09605 comEA 2005536..2006222 (-) 687 WP_072361794.1 ComEA family DNA-binding protein Machinery gene
  PT798_RS09610 - 2006262..2006978 (-) 717 WP_000084822.1 class I SAM-dependent methyltransferase -
  PT798_RS09615 rsfS 2006981..2007334 (-) 354 WP_001088020.1 ribosome silencing factor -
  PT798_RS09620 yqeK 2007335..2007919 (-) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  PT798_RS09625 nadD 2007909..2008478 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  PT798_RS09630 yhbY 2008481..2008771 (-) 291 WP_000627815.1 ribosome assembly RNA-binding protein YhbY -
  PT798_RS09635 aroE 2008775..2009581 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  PT798_RS09640 yqeH 2009595..2010695 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=788821 PT798_RS09605 WP_072361794.1 2005536..2006222(-) (comEA) [Staphylococcus aureus strain B-41012]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=788821 PT798_RS09605 WP_072361794.1 2005536..2006222(-) (comEA) [Staphylococcus aureus strain B-41012]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.678

99.561

0.982
  comEA Staphylococcus aureus N315

97.797

99.561

0.974