Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   PT798_RS09380 Genome accession   NZ_CP117979
Coordinates   1960642..1961616 (-) Length   324 a.a.
NCBI ID   WP_000697220.1    Uniprot ID   W8U5L8
Organism   Staphylococcus aureus strain B-41012     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1955642..1966616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT798_RS09340 gcvT 1956143..1957234 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  PT798_RS09345 - 1957393..1957917 (-) 525 WP_001015120.1 shikimate kinase -
  PT798_RS09350 - 1957907..1958053 (-) 147 WP_001792109.1 hypothetical protein -
  PT798_RS09355 comGF 1958150..1958647 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  PT798_RS09360 comGE 1958565..1958864 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  PT798_RS09365 comGD 1958851..1959297 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  PT798_RS09370 comGC 1959275..1959586 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  PT798_RS09375 comGB 1959600..1960670 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  PT798_RS09380 comGA 1960642..1961616 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  PT798_RS09385 - 1961668..1962291 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  PT798_RS09390 - 1962288..1962617 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  PT798_RS09395 - 1962617..1963603 (-) 987 WP_000161314.1 ROK family glucokinase -
  PT798_RS09400 - 1963600..1963803 (-) 204 WP_000087561.1 YqgQ family protein -
  PT798_RS09405 - 1963784..1965247 (-) 1464 WP_001017858.1 rhomboid family intramembrane serine protease -
  PT798_RS09410 - 1965259..1965798 (-) 540 WP_000164546.1 5-formyltetrahydrofolate cyclo-ligase -
  PT798_RS09415 rpmG 1966007..1966156 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36897.96 Da        Isoelectric Point: 8.8516

>NTDB_id=788818 PT798_RS09380 WP_000697220.1 1960642..1961616(-) (comGA) [Staphylococcus aureus strain B-41012]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=788818 PT798_RS09380 WP_000697220.1 1960642..1961616(-) (comGA) [Staphylococcus aureus strain B-41012]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8U5L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

100

100

1
  comGA Staphylococcus aureus N315

100

100

1