Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   PT798_RS09360 Genome accession   NZ_CP117979
Coordinates   1958565..1958864 (-) Length   99 a.a.
NCBI ID   WP_000844413.1    Uniprot ID   X5E258
Organism   Staphylococcus aureus strain B-41012     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1953565..1963864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT798_RS09335 gcvPA 1954777..1956123 (-) 1347 WP_000019690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  PT798_RS09340 gcvT 1956143..1957234 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  PT798_RS09345 - 1957393..1957917 (-) 525 WP_001015120.1 shikimate kinase -
  PT798_RS09350 - 1957907..1958053 (-) 147 WP_001792109.1 hypothetical protein -
  PT798_RS09355 comGF 1958150..1958647 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  PT798_RS09360 comGE 1958565..1958864 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  PT798_RS09365 comGD 1958851..1959297 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  PT798_RS09370 comGC 1959275..1959586 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  PT798_RS09375 comGB 1959600..1960670 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  PT798_RS09380 comGA 1960642..1961616 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  PT798_RS09385 - 1961668..1962291 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  PT798_RS09390 - 1962288..1962617 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  PT798_RS09395 - 1962617..1963603 (-) 987 WP_000161314.1 ROK family glucokinase -
  PT798_RS09400 - 1963600..1963803 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11093.20 Da        Isoelectric Point: 9.9215

>NTDB_id=788814 PT798_RS09360 WP_000844413.1 1958565..1958864(-) (comGE) [Staphylococcus aureus strain B-41012]
MKSYKCKGSFLIDSMAGFLLIGLITLLLIPMMNQMQASINHKLQTIDASKVILTTVSKINKEELKKGVTIGKYDIKQSDQ
QICAISKNTTSYQKTCIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=788814 PT798_RS09360 WP_000844413.1 1958565..1958864(-) (comGE) [Staphylococcus aureus strain B-41012]
ATGAAAAGCTATAAGTGTAAAGGATCATTCTTAATAGATAGTATGGCTGGATTTTTGCTAATTGGATTGATTACATTACT
ATTGATACCAATGATGAATCAAATGCAAGCGAGTATAAACCATAAACTACAAACAATTGATGCTTCTAAAGTAATTTTGA
CGACTGTATCTAAAATTAATAAAGAAGAACTTAAGAAGGGGGTAACTATAGGGAAGTATGATATTAAGCAAAGTGACCAA
CAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5E258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus MW2

86.842

100

1
  comGE Staphylococcus aureus N315

98.99

100

0.99