Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   PT798_RS06440 Genome accession   NZ_CP117979
Coordinates   1341657..1342643 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain B-41012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1336657..1347643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT798_RS06415 opp4B 1336869..1337831 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  PT798_RS06420 opp4C 1337844..1338725 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  PT798_RS06425 trpS 1338767..1339756 (-) 990 WP_031589556.1 tryptophan--tRNA ligase -
  PT798_RS06430 spxA 1340051..1340446 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  PT798_RS06435 mecA 1340817..1341536 (+) 720 WP_001217723.1 adaptor protein MecA -
  PT798_RS06440 coiA 1341657..1342643 (+) 987 WP_000959292.1 competence protein CoiA family protein Machinery gene
  PT798_RS06445 pepF 1342691..1344499 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  PT798_RS06450 yjbH 1344959..1345765 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  PT798_RS06455 - 1345788..1346153 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  PT798_RS06460 - 1346257..1346850 (-) 594 WP_000224611.1 CYTH domain-containing protein -
  PT798_RS06465 - 1347036..1347383 (+) 348 WP_031589545.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=788806 PT798_RS06440 WP_000959292.1 1341657..1342643(+) (coiA) [Staphylococcus aureus strain B-41012]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=788806 PT798_RS06440 WP_000959292.1 1341657..1342643(+) (coiA) [Staphylococcus aureus strain B-41012]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994
  coiA Staphylococcus aureus N315

97.561

100

0.976