Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PT722_RS01535 Genome accession   NZ_CP117970
Coordinates   343601..344167 (+) Length   188 a.a.
NCBI ID   WP_002364599.1    Uniprot ID   A0A1B4XKB5
Organism   Enterococcus faecalis strain B-537     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 338601..349167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT722_RS01525 gyrA 340578..343079 (+) 2502 WP_002361457.1 DNA gyrase subunit A -
  PT722_RS01530 rpsF 343254..343556 (+) 303 WP_002356019.1 30S ribosomal protein S6 -
  PT722_RS01535 ssb 343601..344167 (+) 567 WP_002364599.1 single-stranded DNA-binding protein Machinery gene
  PT722_RS01540 rpsR 344193..344432 (+) 240 WP_002356021.1 30S ribosomal protein S18 -
  PT722_RS01545 - 344589..346613 (+) 2025 WP_002364597.1 DHH family phosphoesterase -
  PT722_RS01550 rplI 346619..347071 (+) 453 WP_002356023.1 50S ribosomal protein L9 -
  PT722_RS01555 dnaB 347344..348711 (+) 1368 WP_002381331.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20574.18 Da        Isoelectric Point: 4.6010

>NTDB_id=788648 PT722_RS01535 WP_002364599.1 343601..344167(+) (ssb) [Enterococcus faecalis strain B-537]
MINNVVLVGRLTKDPDLRYTASGSAVATFTLAVNRNFTNQNGDREADFINCVIWRKPAETMANYARKGTLLGVVGRIQTR
NYENQQGQRVYVTEVVCENFQLLESRSASEQRGTGGGSFNNNENGYQSQNRSFGNNNAGSGFNNNNNSFNPSSSQSQNNN
GMPDFDKDSDPFGGSGSSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=788648 PT722_RS01535 WP_002364599.1 343601..344167(+) (ssb) [Enterococcus faecalis strain B-537]
ATGATTAATAACGTTGTATTAGTCGGAAGATTGACAAAAGATCCTGACTTACGTTACACCGCTAGTGGTTCAGCTGTTGC
GACCTTTACACTTGCTGTAAACCGTAACTTTACGAATCAAAATGGTGACCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCCGCAGAAACAATGGCTAATTATGCCCGTAAAGGTACATTATTAGGTGTTGTCGGAAGAATTCAAACTCGT
AACTACGAGAACCAACAAGGTCAACGTGTCTACGTAACTGAAGTGGTTTGTGAAAACTTCCAATTGTTAGAATCTCGTTC
TGCTTCAGAACAAAGAGGAACTGGCGGCGGTAGCTTTAATAACAACGAAAATGGTTATCAATCACAAAATCGTAGCTTTG
GTAATAACAATGCCGGTTCTGGATTTAATAACAACAACAATAGTTTCAATCCATCATCTTCTCAGTCGCAAAACAATAAC
GGTATGCCTGATTTCGATAAAGATTCTGATCCATTTGGTGGCTCAGGTTCATCTATCGACATTTCAGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4XKB5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.638

100

0.606
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.85

100

0.543