Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q6379_RS10395 Genome accession   NZ_CP130892
Coordinates   1956032..1959160 (+) Length   1042 a.a.
NCBI ID   WP_304672926.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ204705     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1951032..1964160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6379_RS10375 (Q6379_10375) - 1951730..1952179 (-) 450 WP_003692085.1 CopD family copper resistance protein -
  Q6379_RS10380 (Q6379_10380) waaA 1952220..1953491 (-) 1272 WP_025455875.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  Q6379_RS10385 (Q6379_10385) gnd 1953554..1955002 (-) 1449 WP_047918633.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  Q6379_RS10390 (Q6379_10390) - 1955082..1955345 (-) 264 WP_304672925.1 hypothetical protein -
  Q6379_RS10395 (Q6379_10395) pilC 1956032..1959160 (+) 3129 WP_304672926.1 PilC family type IV pilus tip adhesin Machinery gene
  Q6379_RS10400 (Q6379_10400) - 1959886..1960170 (+) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  Q6379_RS10405 (Q6379_10405) yccS 1960654..1962804 (-) 2151 WP_003697785.1 YccS family putative transporter -
  Q6379_RS10410 (Q6379_10410) pilU 1962921..1964147 (-) 1227 WP_003690199.1 PilT/PilU family type 4a pilus ATPase Machinery gene

Sequence

Protein


Download         Length: 1042 a.a.        Molecular weight: 114641.80 Da        Isoelectric Point: 9.8716

>NTDB_id=788181 Q6379_RS10395 WP_304672926.1 1956032..1959160(+) (pilC) [Neisseria gonorrhoeae strain NJ204705]
MNKTLKRQVFRHTALYAAILMFSHTGGGGGGGAMAQTRQYAIVMNERNQPEVKWNGQYQKSQLREKDGERKFIYTNQKNQ
WGQQNNFISFDNTDTLVSRQSGTAVFGTATYLPPYGKVSGFDTAELNKRGNAVNWIHTTRAGLSGYSYTGVTCRSSKCPQ
LVYKTRFSFDNTGLAKNTGRLDRHPDPSRENSPIYKLKDHPWLGVSFNLGAEGTDKDGRSSNKLVSSFDENNSNQNLVYT
TEGHRISLGDWQREHTAMAYYLNAKLHLLDKKQIENIAPGKTVRLGTLRPRVETTGRSWLDFWATWKIEDKGNITVRLDL
PEVKAGRCINKPNPNKNTKAPSPALTAPALWFGPVQNGKVQMYSASVSTYPGSSSSRIFLQELKTQTDPARPGRHSLAAL
DTQNIKSREPNFNSRQTVIRLPGGVYKINPVKNGGRVAGFNGNDGKNDTFGIYKDRLVTPEADEWSEVLLPWTARYYGND
DIFKTFNQPNNKKQSDKKQYSQKYRIRTKEDDNDKPRDLGDIVNSPITAVGGYLATSANDGMVHIFKKTGTDQRGYELKL
SYIPGTMERKDIENQDSTLAKELRTFAEKGYVGDRYGVDGGFVLRSITDDQDRQKHFFMFGAMGLGGRGAYALDLSKIDS
NPVGVSMFDVQNESKNNGVKLGYTVGTPQIGKTQNGKYAAFLASGYAAKQIASQENKTALYVYDLGNGSGSLIKKIEVQG
GKGGLSSPTLVDKDLDGIVDIAYAGDRGGNMYRFDLSDSDSSKWSVSTIFEGGKPITSAPAVSRLADKRVVIFGTGSDLS
EQDVVGTDQQYIYGIFDDDKPTVNVKVTNGTGGGLLEQVLSEENKILFLINNKASGGSADKGWVVKLREGERVTVKPTVV
LRTAFVTIRKYTGNDKCGAQTAILGINTADGGALTPRSARPIVPDHNSVAQYSGHKKTSKGKSIPIGCMEKGGKTVCPNG
YVYDKPVNVRYLDEKKTDDFPVTADGDAGGSGTFKEGKKPARNNRCFSGKGVRTLLMNDLDSLDITGPMCGIKRLSWREV
FF

Nucleotide


Download         Length: 3129 bp        

>NTDB_id=788181 Q6379_RS10395 WP_304672926.1 1956032..1959160(+) (pilC) [Neisseria gonorrhoeae strain NJ204705]
ATGAATAAAACTTTGAAAAGGCAGGTTTTCCGCCATACCGCGCTTTATGCCGCCATCTTGATGTTTTCCCATACCGGCGG
GGGGGGGGGCGGGGGGGCGATGGCGCAAACCCGTCAATACGCTATTGTCATGAACGAACGAAATCAGCCGGAGGTAAAGT
GGAATGGGCAATATCAAAAATCACAATTAAGGGAAAAAGACGGGGAACGCAAATTTATCTATACGAACCAGAAAAACCAG
TGGGGCCAACAAAACAATTTTATCTCATTCGACAATACCGATACCCTTGTTTCCCGACAAAGCGGTACTGCCGTTTTTGG
CACAGCCACCTACCTGCCGCCCTACGGCAAGGTTTCCGGCTTTGATACCGCCGAGCTGAACAAGCGCGGCAATGCCGTCA
ATTGGATTCATACCACCCGGGCCGGGCTGTCAGGCTACTCCTACACCGGCGTCACATGCAGAAGCAGCAAATGCCCCCAA
CTTGTCTATAAAACCCGATTTTCCTTCGACAACACCGGTTTGGCAAAAAATACGGGCAGGCTGGATAGGCACCCGGACCC
AAGCCGCGAAAATTCGCCCATTTACAAATTGAAAGATCATCCATGGTTGGGCGTATCTTTCAATTTGGGCGCCGAGGGTA
CCGACAAAGATGGCAGATCATCCAACAAATTGGTATCTTCTTTTGATGAAAACAATAGTAATCAAAACCTCGTCTATACG
ACAGAAGGCCACCGTATTTCCCTTGGCGACTGGCAGCGCGAACATACCGCCATGGCCTACTATCTGAACGCCAAACTGCA
CCTGCTGGATAAAAAACAGATTGAAAATATCGCGCCAGGCAAAACAGTGCGGTTGGGTACCTTGAGACCGCGCGTCGAGA
CGACAGGACGAAGCTGGCTAGATTTTTGGGCTACGTGGAAGATTGAAGATAAAGGGAACATTACAGTCCGCCTCGACCTG
CCGGAAGTCAAAGCAGGCCGCTGCATCAATAAACCGAACCCCAATAAGAATACCAAAGCCCCTTCGCCGGCCCTGACCGC
CCCCGCGCTGTGGTTCGGCCCTGTGCAAAATGGCAAGGTGCAGATGTATTCCGCTTCGGTTTCTACCTACCCCGGCAGTT
CGAGCAGCCGCATCTTCCTCCAAGAGCTGAAAACTCAAACCGACCCCGCCCGGCCCGGCCGGCATTCCCTCGCCGCTTTG
GATACGCAGAACATCAAAAGCCGCGAGCCGAATTTCAACTCAAGGCAGACCGTGATCCGATTGCCGGGCGGCGTGTACAA
GATCAACCCGGTCAAGAACGGCGGCCGGGTCGCGGGTTTTAATGGCAATGACGGCAAAAACGACACTTTCGGCATCTACA
AGGACAGGCTCGTCACACCTGAGGCCGACGAGTGGAGCGAAGTGCTGCTGCCTTGGACGGCTCGGTATTACGGTAATGAC
GATATATTTAAAACATTCAACCAACCAAACAACAAAAAACAAAGCGACAAAAAACAATACAGCCAAAAATACCGCATCCG
CACAAAAGAAGATGACAATGACAAACCCCGCGATTTGGGCGACATCGTCAACAGCCCGATAACGGCGGTCGGCGGGTATC
TGGCAACTTCTGCCAACGACGGGATGGTGCATATCTTCAAAAAAACCGGCACAGACCAACGAGGCTACGAACTGAAGCTC
AGCTACATCCCCGGTACGATGGAGCGTAAGGATATTGAAAACCAAGACTCCACCCTCGCCAAAGAGCTGCGCACCTTTGC
CGAAAAAGGCTATGTGGGCGACCGCTACGGCGTGGACGGCGGCTTTGTCTTGCGCAGCATTACAGATGACCAAGACAGGC
AAAAACATTTCTTTATGTTCGGCGCAATGGGCCTTGGCGGCAGAGGCGCATACGCCTTGGATTTAAGCAAAATCGACAGC
AACCCGGTCGGCGTTTCCATGTTTGATGTCCAAAACGAGAGTAAAAATAATGGCGTGAAATTAGGCTACACCGTCGGTAC
GCCGCAAATCGGCAAAACCCAAAACGGCAAATACGCCGCCTTCCTCGCCTCCGGTTATGCGGCTAAACAAATTGCCAGCC
AAGAAAATAAAACCGCGCTGTATGTGTATGATTTGGGAAACGGCAGTGGTAGTCTGATTAAAAAAATCGAAGTGCAGGGC
GGCAAGGGCGGGCTTTCGTCCCCCACGCTGGTGGATAAAGATTTGGACGGCATTGTCGATATCGCCTATGCCGGCGACCG
GGGCGGCAATATGTACCGCTTTGATTTGAGCGATTCCGATTCTAGTAAATGGTCTGTAAGCACTATTTTCGAAGGCGGGA
AGCCGATTACCTCCGCGCCCGCCGTTTCCCGACTGGCAGACAAACGCGTGGTCATCTTCGGTACGGGCAGCGATTTGAGT
GAACAGGATGTAGTCGGTACGGATCAACAATATATTTACGGTATCTTTGACGACGATAAGCCGACGGTTAATGTAAAGGT
AACAAACGGCACGGGAGGCGGGCTGCTCGAGCAAGTGCTTAGCGAGGAAAATAAAATCTTGTTCCTGATAAATAATAAGG
CATCCGGCGGATCGGCCGATAAAGGCTGGGTAGTGAAATTGAGGGAAGGAGAACGCGTTACCGTCAAACCGACCGTGGTA
TTGCGTACCGCCTTCGTGACCATCCGGAAATATACGGGTAATGACAAATGCGGCGCGCAAACCGCCATTTTGGGCATCAA
TACCGCCGACGGCGGCGCATTGACTCCGAGAAGCGCGCGCCCGATTGTGCCGGATCACAATTCGGTTGCGCAATATTCCG
GCCATAAGAAAACCTCCAAAGGCAAATCCATCCCTATAGGTTGTATGGAAAAAGGCGGTAAAACCGTCTGCCCGAACGGA
TATGTTTACGACAAACCGGTTAATGTGCGCTACCTGGACGAAAAGAAAACAGACGATTTCCCCGTCACGGCAGACGGTGA
TGCAGGCGGCAGCGGAACATTCAAAGAGGGTAAAAAACCCGCCCGCAATAACCGGTGCTTCTCCGGAAAAGGTGTGCGCA
CCCTGCTGATGAACGATTTGGACAGCTTGGATATTACCGGCCCGATGTGCGGTATCAAACGCTTAAGCTGGCGCGAAGTC
TTCTTCTGA

Domains

Predicted by InterProScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(519-852)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

73.099

100

0.738