Detailed information NTG0788173

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PSR30_RS14980
• Genome accession: NZ_CP117874
• Coordinates: 3337291..3338136 (-)
• Length: 281 a.a.
• NCBI ID: WP_274214130.1
• Uniprot ID: -
• Organism: Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3332291..3343136

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSR30_RS14955 (PSR30_14955)	-	3332482..3333252 (-)	771	WP_274214126.1	ABC transporter ATP-binding protein	-
PSR30_RS14960 (PSR30_14960)	-	3333254..3334291 (-)	1038	WP_274214127.1	FecCD family ABC transporter permease	-
PSR30_RS14965 (PSR30_14965)	-	3334288..3335352 (-)	1065	WP_274214128.1	ABC transporter substrate-binding protein	-
PSR30_RS14970 (PSR30_14970)	-	3335675..3336700 (+)	1026	WP_274214129.1	LLM class flavin-dependent oxidoreductase	-
PSR30_RS14975 (PSR30_14975)	ypdK	3337056..3337130 (+)	75	WP_099606229.1	membrane protein YpdK	-
PSR30_RS14980 (PSR30_14980)	pilD	3337291..3338136 (-)	846	WP_274214130.1	prepilin peptidase	Machinery gene
PSR30_RS14985 (PSR30_14985)	-	3338226..3338972 (-)	747	WP_274214131.1	type II secretion system protein N	-
PSR30_RS14990 (PSR30_14990)	gspM	3338962..3339456 (-)	495	WP_010302957.1	type II secretion system protein GspM	-
PSR30_RS14995 (PSR30_14995)	gspL	3339453..3340730 (-)	1278	WP_274214132.1	type II secretion system protein GspL	-
PSR30_RS15000 (PSR30_15000)	gspK	3340727..3341713 (-)	987	WP_274214133.1	type II secretion system minor pseudopilin GspK	-
PSR30_RS15005 (PSR30_15005)	gspJ	3341710..3342360 (-)	651	WP_274214134.1	type II secretion system minor pseudopilin GspJ	-
PSR30_RS15010 (PSR30_15010)	gspI	3342360..3342725 (-)	366	WP_010302972.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31229.13 Da
• Isoelectric Point: 6.4529

>NTDB_id=788173 PSR30_RS14980 WP_274214130.1 3337291..3338136(-) (pilD) [Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2]
MDDLREFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGVADPDPDTRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLAAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWIGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGLRKEDTAKPLAFGPWLAIGGVFGVIMNGLNL

Nucleotide

• Length: 846 bp

>NTDB_id=788173 PSR30_RS14980 WP_274214130.1 3337291..3338136(-) (pilD) [Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2]
GTGGACGATTTAAGGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGGGCGCTGGGCGTGTTGGGGTTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGATATCGAGCTTGAAACGG
GCGTGGCCGATCCCGATCCTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGTCTTGCCCGCACTGCCAGCAGGCTATT
GCGGTAAAAGATAATATCCCGCTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGCCATCAATCGGTCTCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGGCGGCAGGTTTGCTCTGGTTGCCCGGTATGGCGCTGT
GGGGGGCGTTGATTCTGCTGTCCTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACACTGTCGCTTCTGTGGATAGGGTTGCTGTTTAATCTGTCGGGGACATTTGTCTCATTGAACGATGCCGTAGTCGGCGC
GATGGCCGGTTATTTATCTCTATGGCTACTTTATTGGGCATTCAAATACGCAACAGGCAAAGAAGCGCTGGGGTACGGCG
ATTTTAAGTTGCTGGCTGCGCTGGGAGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTCTGGTGGCGGCGCTGAGC
GGGCTGGTCGTGACTCTCATCTGGCGCGGGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATCGGCGGGGTGTTCGGCGTGATAATGAACGGATTGAATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.292	96.441	0.495
pilD	Vibrio campbellii strain DS40M4	47.037	96.085	0.452
pilD	Neisseria gonorrhoeae MS11	46.36	92.883	0.431
pilD	Acinetobacter baumannii D1279779	43.704	96.085	0.42
pilD	Acinetobacter nosocomialis M2	43.333	96.085	0.416