Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   Q6386_RS06905 Genome accession   NZ_CP130891
Coordinates   1312551..1313795 (-) Length   414 a.a.
NCBI ID   WP_304672881.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ208430     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307551..1318795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6386_RS06870 (Q6386_06870) - 1307754..1309142 (+) 1389 WP_003688859.1 DEAD/DEAH box helicase -
  Q6386_RS06875 (Q6386_06875) - 1309256..1309362 (-) 107 Protein_1314 IS5/IS1182 family transposase -
  Q6386_RS06880 (Q6386_06880) - 1309493..1309693 (-) 201 WP_003688861.1 hypothetical protein -
  Q6386_RS06885 (Q6386_06885) - 1309707..1310261 (-) 555 WP_003688863.1 hypothetical protein -
  Q6386_RS06890 (Q6386_06890) - 1310346..1310846 (-) 501 WP_010357954.1 hypothetical protein -
  Q6386_RS06895 (Q6386_06895) - 1310943..1311152 (+) 210 WP_003702791.1 hypothetical protein -
  Q6386_RS06900 (Q6386_06900) - 1311251..1312444 (+) 1194 WP_003688867.1 aspartate aminotransferase family protein -
  Q6386_RS06905 (Q6386_06905) clpX 1312551..1313795 (-) 1245 WP_304672881.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  Q6386_RS06910 (Q6386_06910) rbfA 1313978..1314349 (+) 372 WP_003692998.1 30S ribosome-binding factor RbfA -
  Q6386_RS06915 (Q6386_06915) - 1314360..1314884 (+) 525 WP_003688872.1 hypothetical protein -
  Q6386_RS06920 (Q6386_06920) truB 1314942..1315862 (+) 921 WP_010357946.1 tRNA pseudouridine(55) synthase TruB -
  Q6386_RS06925 (Q6386_06925) - 1316080..1316580 (+) 501 WP_012503690.1 site-specific DNA-methyltransferase -
  Q6386_RS06930 (Q6386_06930) - 1316814..1318274 (+) 1461 WP_010360128.1 site-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44803.27 Da        Isoelectric Point: 5.1530

>NTDB_id=788084 Q6386_RS06905 WP_304672881.1 1312551..1313795(-) (clpX) [Neisseria gonorrhoeae strain NJ208430]
MSNENRTCSFCGKSKSHAKHLIEGKNAYICDECVANCLEILYEGDNGGTPPENAGGEPEESGKLPTPAEIVANLDDYVIG
QGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
IITKLLGKCDFDVKKAQHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDT
ANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDA
LINILTEPKNALVKQYQALFGIENVGLEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKA
VIEEGREPELVFES

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=788084 Q6386_RS06905 WP_304672881.1 1312551..1313795(-) (clpX) [Neisseria gonorrhoeae strain NJ208430]
ATGTCCAACGAAAACCGTACCTGTTCCTTTTGCGGAAAATCCAAATCACACGCCAAACACCTGATTGAGGGCAAAAACGC
CTATATCTGCGACGAATGCGTCGCAAACTGCCTCGAAATATTGTACGAAGGCGACAACGGCGGCACGCCTCCGGAAAATG
CCGGAGGGGAGCCGGAAGAATCCGGCAAACTGCCCACGCCCGCCGAAATCGTTGCCAACCTCGACGATTATGTCATCGGG
CAGGGGCAGGCGAAAAAGGCGCTGGCGGTTGCGGTTTACAACCATTACAAACGCCTGCGCCACCCGAAAGCCGACGGCGG
TGTCGAATTGTCGAAATCCAACATCCTGCTTATCGGCCCGACCGGATCGGGTAAAACGCTGTTGGCGCAATCTTTGGCAC
GCAAACTGGACGTGCCGTTCGTGATGGCGGATGCGACCACGCTGACCGAAGCCGGCTATGTCGGCGAAGATGTCGAACAA
ATCATTACCAAACTGTTGGGCAAATGCGATTTCGATGTCAAAAAAGCCCAGCACGGCATTGTCTATATTGACGAAATTGA
CAAAATTTCGCGTAAAAGCGACAACCCGTCCATCACGCGCGACGTGTCCGGCGAAGGCGTGCAGCAAGCCTTGCTGAAAC
TGATTGAAGGTACGGTGGCAAGCGTTCCGCCCCAAGGCGGACGCAAGCATCCGAATCAGGAATTTATCAACGTTGATACC
GCCAACATCCTGTTTATCTGCGGCGGCGCGTTTGCAGGCTTGGAAAAAGTGATTCGCCAGCGCACCGAGAAAGGTGGTAT
CGGTTTCGGCGCGTCCGTTCACAGCAAGGACGAAAATGCCGGCATTACCAAGCTGTTCGGCATCGTCGAACCGGAAGATT
TAATCAAATTCGGCCTGATTCCGGAATTAATCGGACGTTTGCCCGTGATTGCAACTTTAGAAGAACTGGATGAGGACGCG
CTGATTAATATTTTAACCGAGCCGAAAAACGCTTTGGTCAAGCAGTATCAAGCCTTGTTCGGCATAGAAAACGTCGGGTT
GGAATTTGAAGAAGGCGCATTGCGTTCCATCGCGCGGCAGGCAATGGAACGCAAAACCGGCGCGCGCGGCCTGCGTTCCA
TCGTCGAACGCTGCCTGCTCGATACGATGTACCGCCTGCCCGATTTGCAAGGCTTGAAAAAAGTGGTGGTCGGCAAGGCA
GTCATCGAAGAGGGCAGGGAACCGGAATTGGTGTTCGAGTCCTGA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(316-387)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

AAA domain (Cdc48 subfamily) (AAA_2)

(112-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.556

100

0.556
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.964

99.758

0.548