Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   PO845_RS17240 Genome accession   NZ_CP117857
Coordinates   3501208..3502593 (-) Length   461 a.a.
NCBI ID   WP_015418335.1    Uniprot ID   -
Organism   Bacillus velezensis strain PT4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3496208..3507593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO845_RS17205 (PO845_17210) flgL 3496383..3497300 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  PO845_RS17210 (PO845_17215) flgK 3497312..3498829 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  PO845_RS17215 (PO845_17220) - 3498845..3499327 (-) 483 WP_003151394.1 flagellar protein FlgN -
  PO845_RS17220 (PO845_17225) flgM 3499342..3499608 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  PO845_RS17225 (PO845_17230) - 3499678..3500097 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  PO845_RS17230 (PO845_17235) comFC 3500171..3500860 (-) 690 WP_196493397.1 phosphoribosyltransferase family protein Machinery gene
  PO845_RS17235 (PO845_17240) - 3500866..3501150 (-) 285 WP_003151389.1 competence protein ComFB -
  PO845_RS17240 (PO845_17245) comFA 3501208..3502593 (-) 1386 WP_015418335.1 DEAD/DEAH box helicase Machinery gene
  PO845_RS17245 (PO845_17250) - 3502701..3503549 (-) 849 WP_015418336.1 DegV family protein -
  PO845_RS17250 (PO845_17255) degU 3503647..3504336 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  PO845_RS17255 (PO845_17260) degS 3504413..3505576 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  PO845_RS17260 (PO845_17265) - 3505799..3506446 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52558.94 Da        Isoelectric Point: 10.1838

>NTDB_id=788067 PO845_RS17240 WP_015418335.1 3501208..3502593(-) (comFA) [Bacillus velezensis strain PT4]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVVMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=788067 PO845_RS17240 WP_015418335.1 3501208..3502593(-) (comFA) [Bacillus velezensis strain PT4]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCCGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627