Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   PO845_RS14935 Genome accession   NZ_CP117857
Coordinates   3069376..3070020 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain PT4     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3064376..3075020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PO845_RS14900 (PO845_14900) - 3065561..3065992 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  PO845_RS14905 (PO845_14905) - 3065992..3066333 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  PO845_RS14910 (PO845_14910) - 3066326..3067807 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  PO845_RS14915 (PO845_14915) - 3067813..3068289 (+) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  PO845_RS14920 (PO845_14920) - 3068289..3068573 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  PO845_RS14925 (PO845_14925) mnhG 3068557..3068931 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  PO845_RS14930 (PO845_14930) - 3068971..3069354 (-) 384 WP_061860832.1 hotdog fold thioesterase -
  PO845_RS14935 (PO845_14935) comA 3069376..3070020 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  PO845_RS14940 (PO845_14940) comP 3070101..3072452 (-) 2352 WP_015418104.1 histidine kinase Regulator
  PO845_RS14945 (PO845_14945) comX 3072430..3072600 (-) 171 WP_015418105.1 competence pheromone ComX -
  PO845_RS14950 (PO845_14950) - 3072597..3073526 (-) 930 WP_224462816.1 polyprenyl synthetase family protein -
  PO845_RS14955 (PO845_14955) degQ 3073657..3073797 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  PO845_RS14960 (PO845_14960) - 3074263..3074604 (+) 342 WP_015418107.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=788061 PO845_RS14935 WP_003152052.1 3069376..3070020(-) (comA) [Bacillus velezensis strain PT4]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=788061 PO845_RS14935 WP_003152052.1 3069376..3070020(-) (comA) [Bacillus velezensis strain PT4]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864