Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   Q6378_RS01690 Genome accession   NZ_CP130889
Coordinates   331485..332729 (-) Length   414 a.a.
NCBI ID   WP_003688869.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NJ209649     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 326485..337729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q6378_RS01655 (Q6378_01655) - 326688..328076 (+) 1389 WP_003693004.1 DEAD/DEAH box helicase -
  Q6378_RS01660 (Q6378_01660) - 328190..328296 (-) 107 Protein_325 IS5/IS1182 family transposase -
  Q6378_RS01665 (Q6378_01665) - 328427..328627 (-) 201 WP_003688861.1 hypothetical protein -
  Q6378_RS01670 (Q6378_01670) - 328641..329195 (-) 555 WP_047924454.1 hypothetical protein -
  Q6378_RS01675 (Q6378_01675) - 329280..329780 (-) 501 WP_010357954.1 hypothetical protein -
  Q6378_RS01680 (Q6378_01680) - 329877..330086 (+) 210 WP_003702791.1 hypothetical protein -
  Q6378_RS01685 (Q6378_01685) - 330185..331378 (+) 1194 WP_003691287.1 aspartate aminotransferase family protein -
  Q6378_RS01690 (Q6378_01690) clpX 331485..332729 (-) 1245 WP_003688869.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  Q6378_RS01695 (Q6378_01695) rbfA 332912..333283 (+) 372 WP_003688871.1 30S ribosome-binding factor RbfA -
  Q6378_RS01700 (Q6378_01700) - 333294..333818 (+) 525 WP_003688872.1 hypothetical protein -
  Q6378_RS01705 (Q6378_01705) truB 333876..334796 (+) 921 WP_047917289.1 tRNA pseudouridine(55) synthase TruB -
  Q6378_RS01710 (Q6378_01710) - 335013..335585 (+) 573 WP_137027330.1 site-specific DNA-methyltransferase -
  Q6378_RS01715 (Q6378_01715) - 335791..337251 (+) 1461 WP_010360128.1 site-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44833.21 Da        Isoelectric Point: 4.8622

>NTDB_id=787914 Q6378_RS01690 WP_003688869.1 331485..332729(-) (clpX) [Neisseria gonorrhoeae strain NJ209649]
MSNENRTCSFCGKSKSHVKHLIEGENAFICDECVSNCLEILYEGDNGGTPPENAGGEPEESGKLPTPAEIVANLDDYVIG
QGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
IITKLLGKCDFDVEKAQHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDT
ANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDA
LINILTEPKNALVKQYQALFGIENVGLEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKA
VIEEGREPELVFES

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=787914 Q6378_RS01690 WP_003688869.1 331485..332729(-) (clpX) [Neisseria gonorrhoeae strain NJ209649]
ATGTCCAACGAAAACCGTACCTGTTCCTTTTGCGGAAAATCCAAATCACACGTCAAACATTTGATTGAGGGCGAAAACGC
CTTTATCTGCGACGAATGCGTCTCAAACTGCCTCGAAATATTGTACGAAGGCGACAACGGCGGCACGCCTCCGGAAAATG
CCGGAGGGGAGCCGGAAGAATCCGGCAAACTGCCCACGCCCGCCGAAATCGTTGCCAACCTCGACGATTATGTCATCGGG
CAGGGGCAGGCGAAAAAGGCGCTGGCGGTTGCGGTTTACAACCATTACAAACGCCTGCGCCACCCGAAAGCCGACGGCGG
TGTCGAATTGTCGAAATCCAACATCCTGCTTATCGGCCCGACCGGATCGGGTAAAACGCTGTTGGCGCAATCTTTGGCAC
GCAAACTGGACGTGCCGTTCGTGATGGCGGATGCGACCACGCTGACCGAAGCCGGCTATGTCGGCGAAGATGTCGAACAA
ATCATTACCAAACTGTTGGGCAAATGCGATTTCGATGTCGAAAAAGCCCAGCACGGCATTGTCTATATTGACGAAATTGA
CAAAATTTCGCGTAAAAGCGACAACCCGTCCATCACGCGCGACGTGTCCGGCGAAGGCGTGCAGCAAGCCTTGCTGAAAC
TGATTGAAGGTACGGTGGCAAGCGTTCCGCCCCAAGGCGGACGCAAGCATCCGAATCAGGAATTTATCAACGTTGATACC
GCCAACATCCTGTTTATCTGCGGCGGCGCGTTTGCAGGCTTGGAAAAAGTGATTCGCCAGCGCACCGAGAAAGGTGGTAT
CGGTTTCGGCGCGTCCGTTCACAGCAAGGACGAAAATGCCGGCATTACCAAGCTGTTCGGCATCGTCGAACCGGAAGATT
TAATCAAATTCGGCCTGATTCCGGAATTAATCGGACGTTTGCCCGTGATTGCAACTTTAGAAGAACTGGATGAGGACGCG
CTGATTAATATTTTAACCGAGCCGAAAAACGCTTTGGTCAAGCAGTATCAAGCCTTGTTCGGCATAGAAAACGTCGGGTT
GGAATTTGAAGAAGGCGCATTGCGTTCCATCGCGCGGCAGGCAATGGAACGCAAAACCGGCGCGCGCGGCCTGCGTTCCA
TCGTCGAACGCTGCCTGCTCGATACGATGTACCGCCTGCCCGATTTGCAAGGCTTGAAAAAAGTGGTGGTCGGCAAGGCA
GTCATCGAAGAGGGCAGGGAACCGGAATTGGTGTTCGAGTCCTGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(112-310)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(316-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.28

100

0.563
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.448

99.758

0.553