Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   Q5419_RS28040 Genome accession   NZ_CP130752
Coordinates   6034286..6034810 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Resistant     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6029286..6039810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q5419_RS28025 (Q5419_28025) aroB 6030402..6031508 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  Q5419_RS28030 (Q5419_28030) aroK 6031558..6032076 (-) 519 WP_003095833.1 shikimate kinase AroK -
  Q5419_RS28035 (Q5419_28035) pilQ 6032088..6034232 (-) 2145 WP_003103267.1 type 4a pilus secretin PilQ Machinery gene
  Q5419_RS28040 (Q5419_28040) comL/pilP 6034286..6034810 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  Q5419_RS28045 (Q5419_28045) pilO 6034807..6035430 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q5419_RS28050 (Q5419_28050) pilN 6035427..6036023 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  Q5419_RS28055 (Q5419_28055) pilM 6036023..6037087 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  Q5419_RS28060 (Q5419_28060) - 6037272..6039743 (+) 2472 WP_061189531.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=787884 Q5419_RS28040 WP_003095836.1 6034286..6034810(-) (comL/pilP) [Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Resistant]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=787884 Q5419_RS28040 WP_003095836.1 6034286..6034810(-) (comL/pilP) [Pseudomonas aeruginosa strain AU10241 isolate AU10241_L13_Resistant]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362