Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PQ477_RS07520 Genome accession   NZ_CP117834
Coordinates   1473410..1473892 (-) Length   160 a.a.
NCBI ID   WP_035396879.1    Uniprot ID   -
Organism   Shouchella hunanensis strain DSM 23008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1468410..1478892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ477_RS07500 (PQ477_07500) rplI 1469609..1470052 (-) 444 WP_035396871.1 50S ribosomal protein L9 -
  PQ477_RS07505 (PQ477_07505) - 1470055..1472019 (-) 1965 WP_035396873.1 DHH family phosphoesterase -
  PQ477_RS07510 (PQ477_07510) - 1472051..1472986 (-) 936 WP_186370689.1 DUF2232 domain-containing protein -
  PQ477_RS07515 (PQ477_07515) rpsR 1473151..1473384 (-) 234 WP_035396877.1 30S ribosomal protein S18 -
  PQ477_RS07520 (PQ477_07520) ssbA 1473410..1473892 (-) 483 WP_035396879.1 single-stranded DNA-binding protein Machinery gene
  PQ477_RS07525 (PQ477_07525) rpsF 1473931..1474218 (-) 288 WP_035396881.1 30S ribosomal protein S6 -
  PQ477_RS07530 (PQ477_07530) ychF 1474613..1475713 (-) 1101 WP_035396883.1 redox-regulated ATPase YchF -
  PQ477_RS07535 (PQ477_07535) - 1475763..1475960 (-) 198 WP_035396885.1 DUF951 domain-containing protein -
  PQ477_RS07540 (PQ477_07540) - 1476025..1477053 (-) 1029 WP_274273554.1 hypothetical protein -
  PQ477_RS07545 (PQ477_07545) yyaC 1477138..1477767 (+) 630 WP_246117092.1 spore protease YyaC -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17479.01 Da        Isoelectric Point: 4.7306

>NTDB_id=787809 PQ477_RS07520 WP_035396879.1 1473410..1473892(-) (ssbA) [Shouchella hunanensis strain DSM 23008]
MLNRVVLVGRLTRDPELRFTPNGVAVANFTLAVNRPFSNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
SYDNNEGKRVFITEVVAESVQFLEPRNSQNNQNQNFGGSQGNYGSGSGNAGSSGNRSNGYDNDPFSNDGSIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=787809 PQ477_RS07520 WP_035396879.1 1473410..1473892(-) (ssbA) [Shouchella hunanensis strain DSM 23008]
TTGTTAAACCGTGTTGTTCTTGTTGGCCGATTAACCCGTGACCCTGAGCTTCGTTTTACCCCGAATGGCGTTGCTGTAGC
GAACTTTACGCTAGCAGTGAATCGTCCATTCTCTAATCAACAAGGGGAAAGAGAAGCGGATTTCATCAATTGTGTTGTTT
GGAGAAAGCCAGCAGAAAACGTAGCGAATTTCTTGAAAAAAGGAAGTTTAGCAGGCGTTGATGGACGAGTTCAAACCCGC
AGTTATGATAACAATGAAGGAAAACGAGTATTTATAACTGAAGTTGTGGCTGAGAGTGTTCAATTCCTTGAACCTCGTAA
TAGCCAAAACAATCAAAACCAAAACTTCGGTGGTTCTCAAGGAAATTATGGATCAGGTTCAGGGAACGCAGGTTCAAGTG
GTAATCGCTCAAACGGTTACGACAATGATCCGTTTTCAAATGATGGTTCAATTGATATTTCTGATGATGACTTACCATTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.326

100

0.694
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.594
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

66.25

0.4