Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   QML87_RS02325 Genome accession   NZ_AP025936
Coordinates   464611..465660 (+) Length   349 a.a.
NCBI ID   WP_000653754.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700617     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 459611..470660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QML87_RS02300 (PC0607_04440) - 460963..461319 (+) 357 WP_000114435.1 hypothetical protein -
  QML87_RS02305 (PC0607_04450) dnaJ 461592..462728 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  QML87_RS02310 (PC0607_04460) - 463108..463395 (-) 288 WP_000777753.1 hypothetical protein -
  QML87_RS02315 (PC0607_04470) - 463405..463815 (-) 411 WP_001278322.1 HIT family protein -
  QML87_RS02320 (PC0607_04480) pptA 463883..464614 (+) 732 WP_000889956.1 ABC transporter ATP-binding protein Regulator
  QML87_RS02325 (PC0607_04490) pptB 464611..465660 (+) 1050 WP_000653754.1 ABC transporter permease Regulator
  QML87_RS02330 (PC0607_04500) - 465828..466157 (-) 330 WP_000132575.1 hypothetical protein -
  QML87_RS02335 (PC0607_04510) - 466433..466771 (+) 339 WP_000682124.1 LytTR family DNA-binding domain-containing protein -
  QML87_RS02340 (PC0607_04520) comE/blpR 466776..467513 (+) 738 WP_001219133.1 LytTR family DNA-binding domain-containing protein Regulator
  QML87_RS02345 (PC0607_04530) - 467527..468867 (+) 1341 WP_001017640.1 sensor histidine kinase -
  QML87_RS02350 (PC0607_04540) blpC 468938..469066 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  QML87_RS02355 (PC0607_04550) - 469123..470484 (-) 1362 WP_001069072.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40499.60 Da        Isoelectric Point: 10.0604

>NTDB_id=78775 QML87_RS02325 WP_000653754.1 464611..465660(+) (pptB) [Streptococcus pneumoniae strain PZ900700617]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQDFPENHWPILLFVGITSVLLFLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLIYVLLLGVGKYFLFRQKASKFFTETG
LNWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
ILAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQAVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=78775 QML87_RS02325 WP_000653754.1 464611..465660(+) (pptB) [Streptococcus pneumoniae strain PZ900700617]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCTTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCTTGCTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTGCAAGATTTTCCTGAAAATC
ATTGGCCTATCCTTTTATTTGTAGGAATTACCTCTGTTTTACTTTTTCTTTGGGGTGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTCGGAGAAGAGGAAATCAAACTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTCCAGACCCTTTTCTTGCTGTTATTTGCGCCCTTATTTTTAGCCATGGGTTATGGTTTGCCTGTCTTCC
TAATCTATGTGCTTTTATTGGGAGTAGGAAAATATTTCCTCTTTCGTCAAAAGGCCAGCAAATTTTTCACGGAAACTGGA
CTGAACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGCAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTCAAGCGTCGTGCCTATCTGGACTTTATCCTAAAGGCTGTTCAGAAGGTGCCTGGAAAGA
TTTGGCAAAATCTCTATCTACGTTCTTATCTGCGAAATGGAGACCTCTTTGCGCTCAGTCTCCGTCTGCTCTTGCTTTCC
ATACTGGCGCAGGTATTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTGGTTCTCTTTAACTACCTCTTGCTCTTTCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCACTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGCTGTAGTCCGAGGATTGACCAGTTTTGTTTTACTGGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTGGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467