Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PT257_RS13875 Genome accession   NZ_CP117818
Coordinates   3108936..3109595 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5916     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3103936..3114595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT257_RS13860 (PT257_13860) - 3104889..3105548 (+) 660 WP_011947560.1 hypothetical protein -
  PT257_RS13865 (PT257_13865) - 3105716..3107044 (+) 1329 WP_061784476.1 DUF1566 domain-containing protein -
  PT257_RS13870 (PT257_13870) uvrC 3107068..3108924 (-) 1857 WP_042754708.1 excinuclease ABC subunit UvrC -
  PT257_RS13875 (PT257_13875) letA 3108936..3109595 (-) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  PT257_RS13880 (PT257_13880) phhA 3109720..3110538 (-) 819 WP_015961727.1 phenylalanine 4-monooxygenase -
  PT257_RS13885 (PT257_13885) - 3110978..3112075 (+) 1098 WP_027226738.1 competence/damage-inducible protein A -
  PT257_RS13890 (PT257_13890) cgtA 3112034..3113059 (-) 1026 WP_015961729.1 Obg family GTPase CgtA -
  PT257_RS13895 (PT257_13895) rpmA 3113273..3113551 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  PT257_RS13900 (PT257_13900) rplU 3113564..3113875 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=787749 PT257_RS13875 WP_011947563.1 3108936..3109595(-) (letA) [Legionella pneumophila strain D5916]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=787749 PT257_RS13875 WP_011947563.1 3108936..3109595(-) (letA) [Legionella pneumophila strain D5916]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1