Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   PT256_RS03510 Genome accession   NZ_CP117817
Coordinates   689103..689552 (-) Length   149 a.a.
NCBI ID   WP_072356079.1    Uniprot ID   -
Organism   Legionella pneumophila strain D5573     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 684103..694552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT256_RS03490 (PT256_03490) - 684378..684770 (-) 393 WP_010946360.1 hypothetical protein -
  PT256_RS03495 (PT256_03495) - 684907..685284 (+) 378 WP_014841112.1 hypothetical protein -
  PT256_RS03500 (PT256_03500) - 685485..686792 (+) 1308 WP_061784172.1 tetratricopeptide repeat protein -
  PT256_RS03505 (PT256_03505) comEC 686818..689025 (-) 2208 WP_061784173.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PT256_RS03510 (PT256_03510) pilE 689103..689552 (-) 450 WP_072356079.1 type IV pilin protein Machinery gene
  PT256_RS03515 (PT256_03515) - 689564..693073 (-) 3510 WP_061784174.1 PilC/PilY family type IV pilus protein -
  PT256_RS03520 (PT256_03520) - 693086..693598 (-) 513 WP_061784175.1 pilus assembly protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16310.60 Da        Isoelectric Point: 7.6922

>NTDB_id=787677 PT256_RS03510 WP_072356079.1 689103..689552(-) (pilE) [Legionella pneumophila strain D5573]
MLSHIHFMKNSRMKQSAFTLVEVLISMVIMGILVSIAYPSYLQYIQKSRRADAHATLTQDQIILERCYSQNFSYAAACGA
LPAFPQTTPNGYYTINISNLTATTYTLTATPVGTQAKDTECASMSINQANVKTAVDSSANAQPECWNPG

Nucleotide


Download         Length: 450 bp        

>NTDB_id=787677 PT256_RS03510 WP_072356079.1 689103..689552(-) (pilE) [Legionella pneumophila strain D5573]
ATGCTCAGTCATATACATTTTATGAAGAATAGCCGTATGAAACAATCCGCGTTTACCCTGGTTGAAGTTCTGATCAGCAT
GGTCATTATGGGAATTCTGGTTTCAATTGCCTATCCATCCTATTTACAATATATCCAAAAATCCCGTCGTGCCGATGCTC
ACGCCACATTGACACAAGATCAAATTATTTTAGAACGCTGTTATTCACAGAATTTTTCCTATGCTGCAGCGTGTGGCGCC
CTACCAGCATTTCCTCAAACAACGCCGAATGGGTATTATACTATCAATATTTCAAACCTGACGGCCACAACGTATACCTT
AACCGCAACCCCTGTTGGAACTCAAGCCAAAGATACCGAGTGTGCCAGCATGTCAATTAATCAGGCCAATGTAAAAACAG
CTGTAGATTCCTCCGCTAATGCGCAACCAGAATGCTGGAATCCCGGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-38)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(39-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

99.329

100

0.993
  pilE Legionella pneumophila strain ERS1305867

99.329

100

0.993