Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG328_RS28040 Genome accession   NZ_CP130730
Coordinates   6139527..6140936 (-) Length   469 a.a.
NCBI ID   WP_390166339.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01518     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6134527..6145936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG328_RS28015 (OG328_27955) - 6134662..6135381 (-) 720 WP_405842757.1 hypothetical protein -
  OG328_RS28020 (OG328_27960) - 6135369..6135908 (-) 540 WP_019064956.1 SigE family RNA polymerase sigma factor -
  OG328_RS28025 (OG328_27965) - 6136250..6137179 (-) 930 WP_405842759.1 A/G-specific adenine glycosylase -
  OG328_RS28030 (OG328_27970) - 6137472..6138302 (+) 831 WP_405842761.1 hypothetical protein -
  OG328_RS28035 (OG328_27975) disA 6138331..6139389 (-) 1059 WP_051801604.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG328_RS28040 (OG328_27980) radA/sms 6139527..6140936 (-) 1410 WP_390166339.1 DNA repair protein RadA Machinery gene
  OG328_RS28045 (OG328_27985) - 6141135..6142835 (+) 1701 WP_405842763.1 BACON domain-containing protein -
  OG328_RS28050 (OG328_27990) - 6142840..6143697 (-) 858 WP_405842765.1 hypothetical protein -
  OG328_RS28055 (OG328_27995) - 6143781..6144734 (+) 954 WP_390166332.1 Ppx/GppA family phosphatase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49652.80 Da        Isoelectric Point: 8.2544

>NTDB_id=787550 OG328_RS28040 WP_390166339.1 6139527..6140936(-) (radA/sms) [Streptomyces sp. NBC_01518]
MAARTKTTKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTSPGRVTTSAVPIGQVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKSASEEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLATIL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLTEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKIPAGMKVLEVADIGDALRVLPRSRKREAPRDAEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=787550 OG328_RS28040 WP_390166339.1 6139527..6140936(-) (radA/sms) [Streptomyces sp. NBC_01518]
ATGGCTGCCCGTACCAAGACCACCAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCTCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGCGCGCCCGCGGTCCGGACGACGTCCCCGGGCC
GCGTCACCACCTCCGCGGTACCGATCGGCCAGGTCGACGGCCGCACGGCCACGGCCCGCTCGACCGGCGTCCCCGAGCTG
GACCGGGTCCTCGGCGGCGGCCTGGTCCCCGGAGCGGTGGTCCTCGTAGCGGGCGAACCGGGCGTGGGCAAGTCGACCCT
CCTCCTCGACGTGGCGGCGAAGTCGGCGAGCGAGGAGCACCGCACGCTCTACGTGACCGGCGAGGAGTCGGCGAGCCAGG
TCCGCCTGCGCGCCGACCGCATCAAGGCGATCGACGACCACCTCTACCTCGCCGCCGAGACCGATCTGGCCACGATCCTG
GGCCACTTGGACGCGGTGAAGCCCTCCCTCCTCATCCTGGACTCCGTCCAGACGGTGGCCTCCCCTGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTCCGCGAGGTGGCCGGCGCCCTGATCCGCGCCTCCAAGGAACGAGGCATGTCTACGCTCC
TCGTAGGCCACGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTGGAACACCTGGTGGACGTGGTCCTCTCCTTC
GAGGGCGACCGCCACGCACGCCTGCGCCTCGTACGGGGCGTCAAGAATCGCTACGGCACGACGGACGAGGTCGGCTGCTT
CGAACTCCACGACGAGGGCATCACCGGCCTGGCCGACCCGAGCGGCCTGTTCCTGACCCGCCGCGCGGAGCCGGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCCCTCACGGTGGACTCCCAGATC
CCCTCCCCCCGCCGCACCACCTCGGGCCTGGAGACATCCCGGGTCTCGATGATGCTGGCGGTCCTGGAACAACGCGGCAA
GATCAGCGCCCTGGGCAAGCGAGACATCTACTCCGCAACGGTGGGCGGAGTAAAACTCACCGAACCGGCAGCAGATCTGG
CCATCGCCCTCGCCCTGGCCTCCGCGGCGAGCGACACCCCCCTCCCCAAGAACCTGGTGGCGATCGGCGAAGTAGGCCTC
GCGGGCGAGGTCAGAAGGGTCACAGGCGTCCAGCGCAGACTCTCCGAGGCACACCGTCTGGGCTTCACCCACGCCCTCGT
TCCGAGCGACCCCGGCAAGATCCCGGCCGGCATGAAGGTCCTCGAAGTAGCCGACATAGGAGACGCTCTCCGGGTCCTTC
CAAGGTCCCGTAAGCGAGAGGCCCCACGGGACGCCGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(370-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

96.375

0.416
  radA Streptococcus mitis SK321

42.257

96.375

0.407
  radA Streptococcus mitis NCTC 12261

42.257

96.375

0.407
  radA Streptococcus pneumoniae Rx1

42.316

95.736

0.405
  radA Streptococcus pneumoniae TIGR4

42.316

95.736

0.405
  radA Streptococcus pneumoniae D39

42.316

95.736

0.405
  radA Streptococcus pneumoniae R6

42.316

95.736

0.405