Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   PTC93_RS16585 Genome accession   NZ_CP117762
Coordinates   3420935..3421753 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2022CK-00839     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3415935..3426753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC93_RS16570 (PTC93_16560) pilE 3416144..3416569 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  PTC93_RS16575 (PTC93_16565) pilY2 3416566..3417048 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  PTC93_RS16580 (PTC93_16570) - 3417061..3420923 (-) 3863 Protein_3237 PilC/PilY family type IV pilus protein -
  PTC93_RS16585 (PTC93_16575) pilX 3420935..3421753 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  PTC93_RS16590 (PTC93_16580) pilW 3421750..3422751 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  PTC93_RS16595 (PTC93_16585) pilV 3422752..3423312 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  PTC93_RS16600 (PTC93_16590) fimU 3423306..3423779 (-) 474 WP_001214061.1 pilus assembly FimT family protein Machinery gene
  PTC93_RS16605 (PTC93_16595) ispH 3423949..3424899 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PTC93_RS16610 (PTC93_16600) gmk 3425022..3425651 (+) 630 WP_000015937.1 guanylate kinase -
  PTC93_RS16615 (PTC93_16605) rpoZ 3425724..3426002 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  PTC93_RS16620 (PTC93_16610) - 3426041..3426170 (+) 130 Protein_3245 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=787509 PTC93_RS16585 WP_000149374.1 3420935..3421753(-) (pilX) [Acinetobacter baumannii strain 2022CK-00839]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=787509 PTC93_RS16585 WP_000149374.1 3420935..3421753(-) (pilX) [Acinetobacter baumannii strain 2022CK-00839]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993