Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   PTC93_RS16570 Genome accession   NZ_CP117762
Coordinates   3416144..3416569 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain 2022CK-00839     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3411144..3421569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTC93_RS16540 (PTC93_16530) - 3411672..3412706 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  PTC93_RS16545 (PTC93_16535) - 3412821..3413762 (+) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  PTC93_RS16550 (PTC93_16540) rplS 3413815..3414183 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  PTC93_RS16555 (PTC93_16545) trmD 3414392..3415132 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PTC93_RS16560 (PTC93_16550) rimM 3415178..3415726 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  PTC93_RS16565 (PTC93_16555) rpsP 3415746..3415997 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  PTC93_RS16570 (PTC93_16560) pilE 3416144..3416569 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  PTC93_RS16575 (PTC93_16565) pilY2 3416566..3417048 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  PTC93_RS16580 (PTC93_16570) - 3417061..3420923 (-) 3863 Protein_3237 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=787507 PTC93_RS16570 WP_000788342.1 3416144..3416569(-) (pilE) [Acinetobacter baumannii strain 2022CK-00839]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=787507 PTC93_RS16570 WP_000788342.1 3416144..3416569(-) (pilE) [Acinetobacter baumannii strain 2022CK-00839]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518