Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG742_RS20595 Genome accession   NZ_CP130727
Coordinates   4649792..4650514 (-) Length   240 a.a.
NCBI ID   WP_405907431.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00828     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4644792..4655514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG742_RS20575 (OG742_20540) - 4645023..4645937 (+) 915 WP_405907427.1 ATP-binding cassette domain-containing protein -
  OG742_RS20580 (OG742_20545) - 4645934..4647544 (+) 1611 WP_405907428.1 ABC transporter permease -
  OG742_RS20585 (OG742_20550) - 4647596..4648375 (+) 780 WP_405907429.1 hypothetical protein -
  OG742_RS20590 (OG742_20555) - 4648485..4649705 (-) 1221 WP_405907430.1 cytochrome P450 -
  OG742_RS20595 (OG742_20560) vraR 4649792..4650514 (-) 723 WP_405907431.1 response regulator Regulator
  OG742_RS20600 (OG742_20565) - 4650511..4651854 (-) 1344 WP_405907432.1 sensor histidine kinase -
  OG742_RS20605 (OG742_20570) - 4652011..4652694 (-) 684 WP_266457527.1 response regulator transcription factor -
  OG742_RS20610 (OG742_20575) - 4652691..4654064 (-) 1374 WP_405911099.1 sensor histidine kinase -
  OG742_RS20615 (OG742_20580) - 4654216..4655445 (-) 1230 WP_405907433.1 acyltransferase -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 25465.10 Da        Isoelectric Point: 4.7446

>NTDB_id=787440 OG742_RS20595 WP_405907431.1 4649792..4650514(-) (vraR) [Streptomyces sp. NBC_00828]
MTGGTSGGTTSGTTSGTAGNTIRVLIADDQVMVREGFSVLLGAMSDIEVVGEAVNGREAVERVRELAPDVVLMDIRMPEM
NGIEATREIVAANGAAKVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFSKL
ADEPRLSATAQAAYGDLTDRETEVLVLIAQGLSNAEIATRLFVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPR

Nucleotide


Download         Length: 723 bp        

>NTDB_id=787440 OG742_RS20595 WP_405907431.1 4649792..4650514(-) (vraR) [Streptomyces sp. NBC_00828]
ATGACGGGCGGCACCAGCGGCGGAACCACCAGCGGAACCACCAGCGGTACCGCCGGCAACACCATCCGCGTACTGATAGC
CGATGACCAGGTGATGGTCCGCGAGGGCTTCTCCGTGCTGCTCGGCGCGATGTCGGACATCGAGGTGGTCGGCGAGGCGG
TCAACGGTCGGGAGGCCGTCGAGCGGGTCCGTGAGCTGGCCCCGGACGTCGTGCTGATGGACATCCGGATGCCGGAGATG
AACGGGATCGAGGCGACCCGGGAGATCGTCGCGGCGAACGGCGCCGCGAAGGTGCTGGTCCTGACGACGTTCGACCTCGA
CGAGTACGTGTACCAGGCGCTGCGGGCGGGAGCCTCCGGCTTCCTCCTCAAGGACGCCTCGGCGCGCCAGCTCGCCGACG
GGGTGAGGGTGGTGGCGGCCGGCGAGGCGCTGCTCGCCCCCTCCGTCACCAGGCGGTTGATCACCGAGTTCTCCAAGCTC
GCGGACGAGCCCCGGCTCTCGGCCACGGCACAGGCGGCGTACGGCGATCTCACCGACCGGGAGACCGAGGTGCTGGTCCT
CATCGCGCAGGGCCTGTCGAACGCGGAGATCGCGACCCGGCTGTTCGTCGCCGAGTCCACGATCAAGACCCATGTGAGCC
GGATCCTGGTGAAGCTGGGCCTGCGGGACCGTACGCAGGCGGCGGTGTTCGCGTACGAGGCACGGCTGGTCACGCCCAGG
TGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(24-133)

Bacterial regulatory proteins, luxR family (GerE)

(177-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.7

90.417

0.404
  degU Bacillus subtilis subsp. subtilis str. 168

41.935

90.417

0.379