Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OG742_RS20460 Genome accession   NZ_CP130727
Coordinates   4619570..4620169 (-) Length   199 a.a.
NCBI ID   WP_326721624.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00828     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4614570..4625169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG742_RS20430 (OG742_20395) - 4614746..4615153 (+) 408 WP_405907407.1 hypothetical protein -
  OG742_RS20435 (OG742_20400) - 4615158..4617851 (-) 2694 WP_405907408.1 tetratricopeptide repeat protein -
  OG742_RS20440 (OG742_20405) - 4617876..4618187 (-) 312 WP_405907409.1 trypco2 family protein -
  OG742_RS20445 (OG742_20410) - 4618298..4618630 (-) 333 WP_266457432.1 helix-turn-helix domain-containing protein -
  OG742_RS20450 (OG742_20415) - 4618627..4618896 (-) 270 Protein_4064 type II toxin-antitoxin system RelE/ParE family toxin -
  OG742_RS20455 (OG742_20420) - 4618918..4619577 (-) 660 WP_266457438.1 DUF5063 domain-containing protein -
  OG742_RS20460 (OG742_20425) recR 4619570..4620169 (-) 600 WP_326721624.1 recombination mediator RecR Machinery gene
  OG742_RS20465 (OG742_20430) - 4620289..4620633 (-) 345 WP_266457444.1 YbaB/EbfC family nucleoid-associated protein -
  OG742_RS20470 (OG742_20435) - 4620894..4621706 (+) 813 WP_405907410.1 SLATT domain-containing protein -
  OG742_RS20475 (OG742_20440) - 4621892..4623295 (-) 1404 WP_405907411.1 M20/M25/M40 family metallo-hydrolase -
  OG742_RS20480 (OG742_20445) - 4623401..4624930 (-) 1530 WP_405907412.1 substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21772.18 Da        Isoelectric Point: 4.9908

>NTDB_id=787439 OG742_RS20460 WP_326721624.1 4619570..4620169(-) (recR) [Streptomyces sp. NBC_00828]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQCLMEAKAKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEESKDVVAVERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGVVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=787439 OG742_RS20460 WP_326721624.1 4619570..4620169(-) (recR) [Streptomyces sp. NBC_00828]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAGTTGGGGCGGTTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCCGAGCCGACGGACGTCCGCCGTCTCGCGCAGTGCCTGATGGAGGCCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGGAACGTCGCGCAGGAAGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCTCGGTG
ATCTGCGTGGTCGAGGAGTCGAAGGACGTCGTAGCGGTCGAGCGCACCCGCGAGTTCCGGGGCAAGTACCACGTCCTGGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCGGACGACCTGCGCATAAGAGAGCTCCTGGCCCGTCTCGCCGACGGTG
TGGTCACGGAACTGATCCTCGCCACGGACCCGAACCTGGAGGGCGAGGCCACGGCCACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTCACGCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467