Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG742_RS19535 Genome accession   NZ_CP130727
Coordinates   4410493..4411902 (+) Length   469 a.a.
NCBI ID   WP_266456941.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00828     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4405493..4416902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG742_RS19515 (OG742_19480) - 4405536..4406360 (-) 825 WP_266456932.1 sugar phosphate isomerase/epimerase -
  OG742_RS19520 (OG742_19485) - 4406549..4407481 (-) 933 WP_405907298.1 Ppx/GppA family phosphatase -
  OG742_RS19525 (OG742_19490) - 4407553..4408392 (+) 840 WP_385749706.1 hypothetical protein -
  OG742_RS19530 (OG742_19495) - 4408426..4410285 (-) 1860 WP_405907299.1 BACON domain-containing protein -
  OG742_RS19535 (OG742_19500) radA/sms 4410493..4411902 (+) 1410 WP_266456941.1 DNA repair protein RadA Machinery gene
  OG742_RS19540 (OG742_19505) disA 4411974..4413098 (+) 1125 WP_266830670.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG742_RS19545 (OG742_19510) - 4413194..4414021 (-) 828 WP_405907300.1 hypothetical protein -
  OG742_RS19550 (OG742_19515) - 4414366..4415280 (+) 915 WP_266456949.1 A/G-specific adenine glycosylase -
  OG742_RS19555 (OG742_19520) - 4415569..4416120 (+) 552 WP_266456951.1 SigE family RNA polymerase sigma factor -
  OG742_RS19560 (OG742_19525) - 4416240..4416848 (+) 609 WP_405907301.1 hypothetical protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49604.78 Da        Isoelectric Point: 8.0022

>NTDB_id=787433 OG742_RS19535 WP_266456941.1 4410493..4411902(+) (radA/sms) [Streptomyces sp. NBC_00828]
MAVRTKSAKDRPSYRCTECGWQTAKWLGRCSECQAWGTVEEYGAPAVRTTAPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRLRADRIKAIDDHLYLAAETDLAAVL
GHLDAVKPSLLIVDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKIPPGMKVLEVADMGAALSVLPRSRRREAPREEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=787433 OG742_RS19535 WP_266456941.1 4410493..4411902(+) (radA/sms) [Streptomyces sp. NBC_00828]
ATGGCTGTCCGTACGAAATCCGCGAAGGACCGACCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGTTGCTCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCTGTCCGTACGACGGCACCGGGCC
GGGTCACCACGTCCGCGGTCCCCATCGGGCAGGTCGACGGCCGCCAGGCCACCGCGCGCTCCACCGGAGTGCCCGAGCTG
GACCGCGTCCTCGGCGGCGGTCTCGTACCCGGCGCGGTCGTCCTCCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACCCT
GCTCCTTGACGTGGCGGCCAAGGCGGCGAGCGACGAGCACCGCACGTTGTACGTGACCGGGGAGGAGTCGGCCAGCCAGG
TGCGGCTCCGCGCCGACCGCATCAAGGCCATCGACGACCATCTCTATCTCGCCGCCGAGACCGATCTGGCCGCCGTTCTC
GGTCACTTGGACGCGGTGAAGCCGTCCCTGCTCATCGTGGACTCCGTACAGACCGTCGCCTCCCCGGAGATCGACGGGGC
ACCGGGCGGCATGGCCCAGGTCCGGGAGGTCGCCGGTGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACCCTCC
TCGTCGGCCATGTCACCAAGGACGGCGCGATCGCGGGCCCCCGCCTCCTCGAACACCTCGTGGACGTCGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCAGGCTCGTACGAGGGGTCAAGAACCGTTACGGGACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACAGGACTGGCCGACCCTTCGGGCCTGTTCCTGACCCGCCGCGCGGAGGCGGTCCCCG
GCACCTGTCTGACGGTCACTCTGGAGGGCCGCCGCCCCTTGGTGGCCGAAGTGCAGGCGCTCACGGTCGACTCGCAGATC
CCCTCACCCCGTCGCACGACCTCCGGTCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCACCGCCCTGGGGAAGCGGGACATCTACTCGGCGACGGTCGGCGGAGTGAAGCTCTCCGAGCCCGCCGCGGACCTCG
CGATCGCACTCGCCCTCGCCTCCGCCGCGAGCGACACCCCGCTGCCGAAGAACCTCGTGGCGATCGGCGAAGTGGGGCTC
GCCGGGGAGGTCAGACGGGTCACGGGCGTTCAGCGCCGGCTCGCCGAAGCCCACCGGCTGGGCTTCACGCACGCCCTCGT
CCCGAGCGATCCCGGCAAGATCCCTCCCGGCATGAAGGTCCTGGAAGTCGCCGACATGGGAGCCGCGCTGAGCGTCCTGC
CGAGGTCGCGTCGTCGAGAGGCCCCACGGGAGGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.363

96.375

0.418
  radA Streptococcus mitis NCTC 12261

44.009

92.537

0.407
  radA Streptococcus mitis SK321

44.009

92.537

0.407
  radA Streptococcus pneumoniae TIGR4

44.131

90.832

0.401
  radA Streptococcus pneumoniae D39

44.131

90.832

0.401
  radA Streptococcus pneumoniae Rx1

44.131

90.832

0.401
  radA Streptococcus pneumoniae R6

44.131

90.832

0.401