Detailed information NTG0787343

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PTC88_RS21830
• Genome accession: NZ_CP117740
• Coordinates: 4418861..4419661 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain 2022CK-00768
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4413861..4424661

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PTC88_RS21795 (PTC88_21795)	gspH	4414017..4414532 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
PTC88_RS21800 (PTC88_21800)	gspI	4414529..4414894 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
PTC88_RS21805 (PTC88_21805)	gspJ	4414891..4415487 (+)	597	WP_032433846.1	type II secretion system minor pseudopilin GspJ	-
PTC88_RS21810 (PTC88_21810)	gspK	4415484..4416470 (+)	987	WP_077255453.1	type II secretion system minor pseudopilin GspK	-
PTC88_RS21815 (PTC88_21815)	gspL	4416457..4417650 (+)	1194	WP_032416685.1	type II secretion system protein GspL	-
PTC88_RS21820 (PTC88_21820)	-	4417643..4418128 (+)	486	WP_004145896.1	type II secretion system protein M	-
PTC88_RS21825 (PTC88_21825)	-	4418118..4418864 (+)	747	WP_004145897.1	type II secretion system protein N	-
PTC88_RS21830 (PTC88_21830)	pilD	4418861..4419661 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
PTC88_RS21835 (PTC88_21835)	hrpB	4419709..4422138 (-)	2430	WP_064472269.1	ATP-dependent helicase HrpB	-
PTC88_RS21840 (PTC88_21840)	thpR	4422211..4422747 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
PTC88_RS21845 (PTC88_21845)	sfsA	4422747..4423463 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
PTC88_RS21850 (PTC88_21850)	dksA	4423626..4424081 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=787343 PTC88_RS21830 WP_004191960.1 4418861..4419661(+) (pilD) [Klebsiella pneumoniae strain 2022CK-00768]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=787343 PTC88_RS21830 WP_004191960.1 4418861..4419661(+) (pilD) [Klebsiella pneumoniae strain 2022CK-00768]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421