Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   OG736_RS15400 Genome accession   NZ_CP130718
Coordinates   3423992..3424498 (-) Length   168 a.a.
NCBI ID   WP_327182952.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01334     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 3418992..3429498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG736_RS15380 (OG736_15365) - 3419264..3420265 (+) 1002 WP_327182949.1 alpha/beta hydrolase -
  OG736_RS15385 (OG736_15370) - 3420340..3422640 (-) 2301 WP_327182950.1 FtsX-like permease family protein -
  OG736_RS15390 (OG736_15375) - 3422637..3423266 (-) 630 WP_327187614.1 ABC transporter ATP-binding protein -
  OG736_RS15395 (OG736_15380) - 3423388..3423816 (-) 429 WP_327182951.1 hypothetical protein -
  OG736_RS15400 (OG736_15385) comA 3423992..3424498 (-) 507 WP_327182952.1 ATP-binding cassette domain-containing protein Regulator
  OG736_RS15405 (OG736_15390) - 3425082..3425663 (-) 582 WP_327182953.1 hypothetical protein -
  OG736_RS15410 (OG736_15395) ppdK 3426323..3429070 (-) 2748 WP_327182954.1 pyruvate, phosphate dikinase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18133.57 Da        Isoelectric Point: 6.4933

>NTDB_id=787170 OG736_RS15400 WP_327182952.1 3423992..3424498(-) (comA) [Streptomyces sp. NBC_01334]
MFSAGITEARGAVHATVYRTFLAAAARAADAHEFITALPEGYDTWIDPNSARLSGGQLQRLAIARAVLRDAPVLVLDEPT
TGLDAIATRRIVEPLRRLMAGRTTIMITHDLNLAPDADRILVVDRGHLMETGRHLDLLTHGGTYAHLHGSQNAAFAESPS
DAYAWIAS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=787170 OG736_RS15400 WP_327182952.1 3423992..3424498(-) (comA) [Streptomyces sp. NBC_01334]
TTGTTCAGTGCCGGCATCACCGAGGCCCGCGGAGCGGTGCACGCCACGGTCTACCGCACGTTCCTCGCGGCGGCGGCCCG
GGCGGCCGACGCGCACGAGTTCATCACCGCGCTGCCCGAGGGGTACGACACCTGGATCGACCCCAACTCCGCACGGTTGT
CCGGCGGTCAGCTGCAGCGCCTCGCCATCGCGCGGGCCGTGCTGCGGGACGCGCCGGTCCTCGTCCTCGACGAACCGACC
ACCGGACTGGACGCGATCGCCACCCGCCGCATCGTCGAACCGCTGCGCCGGCTCATGGCTGGCCGCACCACCATCATGAT
CACGCACGACCTCAACCTGGCTCCCGACGCCGACCGCATCCTCGTCGTCGACCGCGGCCACCTGATGGAAACGGGCCGCC
ACCTAGACCTCCTCACCCACGGCGGCACCTACGCCCACCTGCACGGCTCCCAGAACGCGGCCTTCGCGGAATCCCCTTCC
GACGCTTACGCGTGGATCGCTTCTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(28-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae TIGR4

43.571

83.333

0.363
  comA Streptococcus pneumoniae Rx1

43.571

83.333

0.363
  comA Streptococcus pneumoniae D39

43.571

83.333

0.363
  comA Streptococcus pneumoniae R6

43.571

83.333

0.363
  comA Streptococcus mitis NCTC 12261

43.571

83.333

0.363