Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PSR14_RS21855 Genome accession   NZ_CP117702
Coordinates   4141653..4143392 (-) Length   579 a.a.
NCBI ID   WP_000947749.1    Uniprot ID   A0A1J9YIX3
Organism   Bacillus sp. A01H     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4136653..4148392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR14_RS21830 (PSR14_21815) - 4137692..4137925 (+) 234 WP_001190187.1 DUF2627 domain-containing protein -
  PSR14_RS21835 (PSR14_21820) - 4137975..4138703 (-) 729 Protein_4250 glycerophosphodiester phosphodiesterase -
  PSR14_RS21840 (PSR14_21825) - 4138754..4138900 (+) 147 WP_001247671.1 YycC family protein -
  PSR14_RS21845 (PSR14_21830) spo0A 4139154..4139948 (-) 795 WP_014297988.1 sporulation transcription factor Spo0A Regulator
  PSR14_RS21850 (PSR14_21835) spoIVB 4140236..4141534 (-) 1299 WP_098487580.1 SpoIVB peptidase -
  PSR14_RS21855 (PSR14_21840) recN 4141653..4143392 (-) 1740 WP_000947749.1 DNA repair protein RecN Machinery gene
  PSR14_RS21860 (PSR14_21845) argR 4143659..4144108 (-) 450 WP_001032581.1 arginine repressor ArgR -
  PSR14_RS21865 (PSR14_21850) - 4144251..4145090 (-) 840 WP_001274742.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  PSR14_RS21870 (PSR14_21855) dxs 4145094..4146986 (-) 1893 WP_000366458.1 1-deoxy-D-xylulose-5-phosphate synthase -
  PSR14_RS21875 (PSR14_21860) ispA 4147289..4148179 (-) 891 WP_000150360.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65775.82 Da        Isoelectric Point: 4.8260

>NTDB_id=787141 PSR14_RS21855 WP_000947749.1 4141653..4143392(-) (recN) [Bacillus sp. A01H]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIEK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSVLKEIGKTLVDIHGQHETQDLMNEERHLFMLDHFDGERIVKQL
DIYQNVYADYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKIDEENDLTEERLQISNFEKIYKALGDAYRSLSA
DGQGLDNVRSAMGQMESITHLDEVYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPNRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTKKQLKELESVILKEATLLSNMRHELAEHLTNAIHQELKELYMEKTKFEVRIM
KREGNAEEPLVEGAPVRLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLTMEDKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=787141 PSR14_RS21855 WP_000947749.1 4141653..4143392(-) (recN) [Bacillus sp. A01H]
TTGTTATCGGAATTATCGATTAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGATTAACGGTTTT
AAGTGGTGAAACAGGGGCCGGAAAATCGATTATTATTGATGCGATTAGTTTACTTGTAGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATACGGAACAGAAAAAGCTGAGATAGAGGGGCTATTTTATGTGGAAGATGATAAGCATCCATGTATTGAAAAA
GCAGAAGAGTTGGATATAGAAATAGAAGACGGCATGATTATTTTGAAGCGTGATATCGCTGCAAACGGAAAAAGTGTATG
TCGTGTAAATGGAAAACTAGTTACCCTTAGTGTATTAAAAGAAATTGGAAAAACACTTGTTGATATTCATGGACAACACG
AAACGCAAGACTTAATGAATGAAGAACGTCATCTATTTATGCTCGATCATTTTGATGGAGAGCGTATCGTTAAACAATTA
GATATATACCAAAACGTATATGCTGACTATGAGAAATTAAAAAAACAGTTGAAATCGTTAAGTGAAAATGAACAACAAAT
GGCACATCGTTTAGATTTAATTCAATTTCAGCATGAAGAAATCCGTAAAGCGGATTTAAAGATAGATGAAGAAAATGACT
TAACTGAAGAACGATTGCAAATTTCTAATTTCGAAAAAATTTACAAAGCATTAGGGGATGCGTATCGCTCGTTAAGTGCT
GACGGACAAGGGTTAGATAATGTACGAAGCGCAATGGGACAAATGGAGAGTATTACACATTTAGATGAAGTGTATCAAGA
AAATCATGATTCCATTGCCAATAGTTATTATTTATTAGAAGAAGTTGCCTATCAACTAAGAGAAAAGCTCGATATGATGG
AATATGATCCGAATCGCTTAGATGAAATTGAAACGCGTTTAAATGAAATTCGTATGCTAAAGAGAAAATATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTTCATATTGAAAC
GACGAAGAAACAGTTGAAGGAATTAGAAAGTGTTATTCTGAAAGAAGCAACGTTGTTAAGTAATATGCGTCATGAACTTG
CAGAACATCTTACAAATGCCATTCATCAGGAATTAAAAGAATTATATATGGAAAAAACAAAATTTGAAGTGAGAATTATG
AAGCGAGAAGGAAATGCAGAAGAGCCTCTCGTGGAGGGAGCACCGGTAAGACTTACAGCGGATGGTTACGATCATGTGGA
ATTTTATATTTCAACAAATCCGGGTGAGCCGCTAAAACCACTTTCAAAGGTTGCTTCTGGCGGAGAGTTATCCCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACTGGTGTAAGT
GGCCGGGTCGCACAGGCTATTGCGGAAAAGATTTATCGAGTATCAGTAAACTCACAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGATTCGCATTTATTTATTCGAAAACAAGTAGCAAATGATCGAACAATTACATCAGTTACCG
TTTTAACTATGGAGGATAAAGTAACAGAAATAGCTCGAATGATTTCTGGTGTGGAAATTACAGATTTAACGACAGAACAT
GCGAAAGAATTACTTACGCAAGCGCATCATTTTAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1J9YIX3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.104

100

0.601