Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   PSR59_RS09640 Genome accession   NZ_CP117692
Coordinates   1951934..1953211 (-) Length   425 a.a.
NCBI ID   WP_046921574.1    Uniprot ID   -
Organism   Ligilactobacillus ruminis strain CACC888     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1946934..1958211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR59_RS09620 (PSR59_09620) pdxS 1947718..1948596 (+) 879 WP_046921578.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
  PSR59_RS09625 (PSR59_09625) pdxT 1948601..1949173 (+) 573 WP_170090179.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  PSR59_RS09630 (PSR59_09630) - 1949482..1950090 (-) 609 WP_273744947.1 GNAT family N-acetyltransferase -
  PSR59_RS09635 (PSR59_09635) - 1950165..1951883 (-) 1719 WP_080926651.1 proline--tRNA ligase -
  PSR59_RS09640 (PSR59_09640) eeP 1951934..1953211 (-) 1278 WP_046921574.1 RIP metalloprotease RseP Regulator
  PSR59_RS09645 (PSR59_09645) - 1953231..1954022 (-) 792 WP_046921573.1 phosphatidate cytidylyltransferase -
  PSR59_RS09650 (PSR59_09650) - 1954022..1954810 (-) 789 WP_273744948.1 isoprenyl transferase -
  PSR59_RS09655 (PSR59_09655) frr 1954919..1955479 (-) 561 WP_003694053.1 ribosome recycling factor -
  PSR59_RS09660 (PSR59_09660) pyrH 1955699..1956418 (-) 720 WP_046921571.1 UMP kinase -
  PSR59_RS09665 (PSR59_09665) - 1956537..1957151 (-) 615 WP_046921570.1 histidine phosphatase family protein -
  PSR59_RS09670 (PSR59_09670) - 1957397..1958206 (+) 810 WP_273744949.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 46454.24 Da        Isoelectric Point: 9.3788

>NTDB_id=787041 PSR59_RS09640 WP_046921574.1 1951934..1953211(-) (eeP) [Ligilactobacillus ruminis strain CACC888]
MITTIITFIIVFGALVFVHEFGHYFFAKRSGILVREFSIGMGPKIYAYHKNGTTYTLRILPLGGYVRMAGLEDEEDSLKK
GQPISLLLDDNGIVRKINASSKTTLLNAVPLEVSAWDLDQELWIKGYENGDETKEVTYQVDHDAMIIESDGTEVQIAPLD
VRFQSATLPNRMMTNFAGALNNFLLAIVAFALVAVMQGGVITNTTTLGQVQHDSVAQKAGLKKGDTVVSINGEKVADFSE
MAAKIDANPGKKLIFKVKRGKNQVLNISLKPKTVTEDGKKSGKIGVVAKQAVNRSPIAIAEYGFVQTWNVMKQIFAALGA
MLHGFSLNDLGGPVAMYSYTSKAAQYGVVSVISLLAFLSVNLGIVNLLPIPALDGGKLLLNVIEAVRGKPIDPNKEVVLT
LIGFAFMLILMFLVTWNDIQRYFFR

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=787041 PSR59_RS09640 WP_046921574.1 1951934..1953211(-) (eeP) [Ligilactobacillus ruminis strain CACC888]
GTGATTACGACAATAATAACTTTTATCATCGTCTTTGGAGCATTGGTGTTCGTACATGAATTCGGGCACTATTTCTTCGC
CAAGCGTTCCGGAATTTTGGTGCGTGAATTTTCCATCGGCATGGGGCCAAAAATTTACGCGTATCACAAAAACGGAACAA
CTTATACGCTGAGGATCTTGCCTCTTGGCGGATACGTTCGCATGGCCGGACTTGAAGATGAGGAAGATTCTTTGAAAAAA
GGACAGCCGATTTCGCTGTTGTTGGACGATAACGGCATCGTCAGGAAAATCAATGCATCTTCCAAGACGACTTTGTTAAA
TGCAGTGCCGCTTGAGGTGTCTGCATGGGATCTTGATCAAGAATTATGGATCAAAGGTTACGAAAATGGTGACGAAACAA
AAGAGGTAACCTATCAGGTCGATCACGATGCGATGATTATCGAATCAGACGGAACCGAGGTTCAGATTGCACCGCTTGAC
GTTCGATTTCAATCGGCGACGCTTCCTAACAGGATGATGACGAACTTTGCCGGGGCATTGAACAATTTTTTGCTGGCAAT
CGTTGCGTTTGCGCTCGTAGCAGTAATGCAGGGCGGCGTCATTACCAATACGACGACGCTTGGTCAAGTGCAGCACGATT
CCGTTGCGCAAAAAGCCGGGTTGAAAAAGGGCGACACGGTTGTTTCGATCAACGGCGAAAAGGTTGCCGATTTTTCGGAA
ATGGCTGCAAAAATTGATGCCAACCCGGGCAAAAAACTTATTTTTAAGGTCAAACGCGGCAAAAATCAGGTTCTAAACAT
CAGCCTCAAACCCAAGACGGTGACTGAAGACGGCAAAAAATCAGGCAAAATCGGGGTGGTTGCAAAACAAGCAGTCAACC
GCTCTCCGATTGCGATTGCCGAGTACGGGTTTGTTCAAACGTGGAACGTCATGAAACAGATTTTTGCGGCTTTGGGAGCA
ATGCTTCACGGATTCAGCTTAAATGATCTCGGCGGCCCCGTCGCGATGTATTCATATACTTCAAAAGCGGCTCAGTATGG
CGTTGTCAGCGTTATTTCGCTGCTCGCGTTTCTATCGGTCAACCTTGGAATCGTCAACCTGCTGCCGATTCCTGCTTTGG
ATGGCGGCAAGCTTTTGCTGAACGTTATTGAAGCTGTCAGAGGCAAGCCAATCGATCCGAATAAGGAAGTCGTTTTGACT
TTGATCGGTTTCGCATTTATGCTGATTTTAATGTTTTTGGTAACGTGGAACGATATTCAGCGGTATTTCTTCCGCTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(209-259)

Peptidase family M50 (Peptidase_M50)

(7-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

48.131

100

0.485
  eeP Streptococcus thermophilus LMG 18311

47.887

100

0.48