Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSR59_RS03710 Genome accession   NZ_CP117692
Coordinates   754160..754705 (+) Length   181 a.a.
NCBI ID   WP_273745411.1    Uniprot ID   A0AAQ2XL23
Organism   Ligilactobacillus ruminis strain CACC888     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 746225..760257 754160..754705 within 0


Gene organization within MGE regions


Location: 746225..760257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR59_RS03680 (PSR59_03680) dnaN 746225..747364 (+) 1140 WP_046921063.1 DNA polymerase III subunit beta -
  PSR59_RS03685 (PSR59_03685) yaaA 747620..747847 (+) 228 WP_014072629.1 S4 domain-containing protein YaaA -
  PSR59_RS03690 (PSR59_03690) recF 747849..749009 (+) 1161 WP_039122434.1 DNA replication/repair protein RecF -
  PSR59_RS03695 (PSR59_03695) gyrB 749048..751006 (+) 1959 WP_039122436.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  PSR59_RS03700 (PSR59_03700) gyrA 751052..753595 (+) 2544 WP_273745410.1 DNA gyrase subunit A -
  PSR59_RS03705 (PSR59_03705) rpsF 753832..754122 (+) 291 WP_003695891.1 30S ribosomal protein S6 -
  PSR59_RS03710 (PSR59_03710) ssb 754160..754705 (+) 546 WP_273745411.1 single-stranded DNA-binding protein Machinery gene
  PSR59_RS03715 (PSR59_03715) rpsR 754726..754962 (+) 237 WP_003695889.1 30S ribosomal protein S18 -
  PSR59_RS03720 (PSR59_03720) tnpA 756455..756853 (+) 399 WP_273745412.1 IS200/IS605 family transposase -
  PSR59_RS03725 (PSR59_03725) - 756853..758046 (+) 1194 WP_273745413.1 RNA-guided endonuclease TnpB family protein -
  PSR59_RS03730 (PSR59_03730) - 758230..759231 (-) 1002 WP_046921539.1 DUF1002 domain-containing protein -
  PSR59_RS03735 (PSR59_03735) pnuC 759496..760257 (+) 762 WP_273745414.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19764.27 Da        Isoelectric Point: 4.9592

>NTDB_id=787023 PSR59_RS03710 WP_273745411.1 754160..754705(+) (ssb) [Ligilactobacillus ruminis strain CACC888]
MINRVVLVGRLTRDPDLRYTNSGTSVASFTVAVDRNFTNQQGNREADFINCVVWGKSAENFANFTHKGSLVGIEGRIQTR
SYENQQGNRVYVTEVVTENFSLLESKAESERYRAQHGGSASSAPRQQSQSSFGGNPYGSPANNQGSYQQDSGYGNGNNDA
MQDPFAGNGSKTDVSEDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=787023 PSR59_RS03710 WP_273745411.1 754160..754705(+) (ssb) [Ligilactobacillus ruminis strain CACC888]
ATGATCAATAGAGTTGTTTTGGTTGGTCGTTTGACCAGAGACCCTGATTTGCGCTACACGAATTCAGGTACTTCAGTGGC
CAGTTTCACTGTTGCCGTCGATCGAAACTTCACTAACCAGCAAGGTAATCGTGAAGCAGATTTTATCAATTGTGTAGTAT
GGGGCAAATCCGCAGAGAATTTTGCCAACTTCACGCATAAGGGTTCGCTTGTCGGAATTGAAGGGCGCATCCAAACGCGT
TCTTACGAAAATCAGCAAGGGAATCGCGTGTATGTGACTGAAGTCGTTACGGAAAACTTCTCGTTGCTCGAATCCAAGGC
AGAATCTGAACGTTACCGCGCACAGCACGGTGGTTCGGCATCATCTGCTCCTCGTCAACAGAGTCAGTCTTCGTTCGGCG
GAAATCCGTACGGATCTCCTGCCAACAATCAAGGCAGTTATCAGCAAGATAGCGGCTATGGCAACGGGAATAACGATGCC
ATGCAGGATCCGTTTGCCGGCAACGGCTCCAAGACGGATGTTTCGGAAGACGACTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.116

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.591

100

0.536