Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   PSR56_RS19530 Genome accession   NZ_CP117689
Coordinates   3695592..3696032 (+) Length   146 a.a.
NCBI ID   WP_221832134.1    Uniprot ID   -
Organism   Priestia megaterium strain GEB3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3690592..3701032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR56_RS19510 (PSR56_19510) - 3690997..3691668 (-) 672 WP_028414985.1 response regulator transcription factor -
  PSR56_RS19515 (PSR56_19515) - 3691994..3692812 (+) 819 WP_033579942.1 squalene/phytoene synthase family protein -
  PSR56_RS19520 (PSR56_19520) - 3692848..3694797 (-) 1950 WP_047750005.1 FUSC family protein -
  PSR56_RS19525 (PSR56_19525) - 3694953..3695213 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  PSR56_RS19530 (PSR56_19530) nucA/comI 3695592..3696032 (+) 441 WP_221832134.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  PSR56_RS19535 (PSR56_19535) comJ 3696068..3696475 (+) 408 WP_033579939.1 competence protein ComJ -
  PSR56_RS19540 (PSR56_19540) - 3696577..3697167 (-) 591 WP_221832133.1 CPBP family intramembrane glutamic endopeptidase -
  PSR56_RS19545 (PSR56_19545) helD 3697552..3699870 (-) 2319 WP_221832131.1 RNA polymerase recycling motor HelD -
  PSR56_RS19550 (PSR56_19550) - 3700114..3700239 (-) 126 WP_016765178.1 hypothetical protein -
  PSR56_RS19555 (PSR56_19555) - 3700379..3700894 (-) 516 WP_221832129.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16033.83 Da        Isoelectric Point: 4.2934

>NTDB_id=786992 PSR56_RS19530 WP_221832134.1 3695592..3696032(+) (nucA/comI) [Priestia megaterium strain GEB3]
MSTYGEKLMASLFIIIACVLGFIGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEAN
REESLKGYPTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 441 bp        

>NTDB_id=786992 PSR56_RS19530 WP_221832134.1 3695592..3696032(+) (nucA/comI) [Priestia megaterium strain GEB3]
ATGAGTACATACGGGGAAAAATTAATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCAGC
GTTTTTAGCTCCTGAAAAAACGGAAGCCGAAGTAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAA
CGGGTGATCATATTCGCGACGCGATTGCCGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGACGGTGCTGAAGCGAAT
CGGGAAGAATCGCTGAAAGGATACCCAACAAAAACAGGATATGACCGCGATGAATGGCCAATGGCTATGTGCGAAGAAGG
CGGAGCGGGAGCTGATATTCGCTATATTTCACCTTCTGATAACCGCGGAGCGGGCTCATGGGTTGGAAATCAATTAGAAC
AATACCCAGATGGTACACGCGTACAATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

86.301

0.562