Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSR47_RS10305 Genome accession   NZ_CP117687
Coordinates   2097302..2097847 (-) Length   181 a.a.
NCBI ID   WP_046921060.1    Uniprot ID   -
Organism   Ligilactobacillus ruminis strain CACC881     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2092302..2102847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR47_RS10285 (PSR47_10285) pnuC 2093623..2094384 (-) 762 WP_273747189.1 nicotinamide riboside transporter PnuC -
  PSR47_RS10290 (PSR47_10290) - 2094649..2095650 (+) 1002 WP_273747190.1 DUF1002 domain-containing protein -
  PSR47_RS10295 (PSR47_10295) - 2096146..2096481 (+) 336 WP_273747191.1 hypothetical protein -
  PSR47_RS10300 (PSR47_10300) rpsR 2097045..2097281 (-) 237 WP_003695889.1 30S ribosomal protein S18 -
  PSR47_RS10305 (PSR47_10305) ssb 2097302..2097847 (-) 546 WP_046921060.1 single-stranded DNA-binding protein Machinery gene
  PSR47_RS10310 (PSR47_10310) rpsF 2097885..2098175 (-) 291 WP_003695891.1 30S ribosomal protein S6 -
  PSR47_RS10315 (PSR47_10315) gyrA 2098412..2100955 (-) 2544 WP_273747192.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19791.29 Da        Isoelectric Point: 4.9592

>NTDB_id=786956 PSR47_RS10305 WP_046921060.1 2097302..2097847(-) (ssb) [Ligilactobacillus ruminis strain CACC881]
MINRVVLVGRLTRDPDLRYTNSGTSVASFTVAVDRNFTNQQGNREADFINCVVWGKSAENFANFTHKGSLVGIEGRIQTR
SYENQQGNRVYVTEVVTENFSLLESKAESERYRAQHGGSASSAPRQQSQSSFGGNPYGSPANNQGSYQQDNGYGNGNNDA
MQDPFAGNGSKTDVSEDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=786956 PSR47_RS10305 WP_046921060.1 2097302..2097847(-) (ssb) [Ligilactobacillus ruminis strain CACC881]
ATGATCAATAGAGTTGTTTTGGTTGGTCGTTTGACCAGAGACCCTGATTTGCGCTACACGAATTCAGGTACTTCAGTGGC
CAGCTTCACTGTTGCCGTCGATCGAAACTTCACTAACCAGCAAGGTAATCGTGAAGCAGATTTTATCAATTGTGTAGTAT
GGGGCAAATCCGCAGAGAATTTTGCCAACTTCACGCATAAGGGTTCGCTTGTCGGGATTGAAGGGCGCATCCAAACGCGT
TCTTACGAAAATCAGCAAGGGAATCGCGTGTATGTGACTGAAGTCGTTACGGAAAACTTCTCGTTGCTCGAATCCAAGGC
AGAATCTGAACGTTACCGCGCACAGCACGGTGGTTCGGCATCATCTGCTCCTCGTCAACAGAGTCAGTCTTCGTTCGGCG
GAAATCCGTACGGATCTCCTGCCAACAATCAAGGCAGTTATCAGCAAGATAACGGCTATGGCAACGGGAATAACGATGCC
ATGCAGGATCCGTTTGCCGGCAACGGCTCCAAGACGGATGTTTCGGAAGACGACTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.116

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.591

100

0.536